https://github.com/domschrei/mallob
Scalable Automated Reasoning for HPC and Clouds
Last synced: 21 Jun 2026
https://github.com/maize-genetics/rTASSEL
R front-end for TASSEL 5
genomic-prediction gwas linkage-disequilibrium
Last synced: 21 Jun 2026
https://github.com/flyaflya/causact/
causact: R package to accelerate computational Bayesian inference workflows in R through interactive visualization of models and their output.
bayesian-inference dags posterior-probability probabilistic-graphical-models probabilistic-programming rstats-package
Last synced: 21 Jun 2026
https://github.com/ajohnson-uoregon/llvm-project/
The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. Note: the repository does not accept github pull requests at this moment. Please submit your patches at http://reviews.llvm.org.
Last synced: 21 Jun 2026
https://github.com/temuller/hostphot
HostPhot: global and local photometry of galaxies hosting supernovae or other transients
cosmology cutout galaxy image photometry python sep sextractor supernova transients
Last synced: 21 Jun 2026
https://github.com/GasChromatographyToolbox/GasChromatographySimulator.jl
A package for the simulation of gas chromatography (GC)
Last synced: 21 Jun 2026
https://github.com/wouterpeere/GHEtool
GHEtool is an open-source tool for borefield sizing and ground temperature evolution plotting.
borefields energy geothermal geothermal-energy sizing storage
Last synced: 21 Jun 2026
https://github.com/SciML/GlobalSensitivity.jl
Robust, Fast, and Parallel Global Sensitivity Analysis (GSA) in Julia
differential-equations efast global-sensitivity-analysis gsa julia julia-language julialang morris-method ode ordinary-differential-equations scientific-machine-learning sciml sensitivity-analysis sobol-method
Last synced: 21 Jun 2026
https://github.com/JuliaHEP/UnROOT.jl
Native Julia I/O package to work with CERN ROOT files objects (TTree and RNTuple)
cern-root hacktober hep high-energy-physics julia particle-physics
Last synced: 21 Jun 2026
https://github.com/SparseLinearAlgebra/spbla
Sparse Boolean linear algebra for Nvidia Cuda, OpenCL and CPU computations
boolean-algebra cplusplus cuda graph-algorithms graphblas opencl python sparse-matrix suitesparse
Last synced: 21 Jun 2026
https://github.com/PCRuniversum/PCRedux
quantitative PCR machine learning helper tool
Last synced: 21 Jun 2026
https://github.com/Mat-dp/mat-dp-core
Mat-dp core cotains the key methods used in the broader Mat-dp model. Mat-dp aims to deliver user-friendly and open-access software to study the environmental implications of materials used for building low-carbon systems.
bulk-materials critical-materials embodied-emissions low-carbon-systems material-demand modelling-tool
Last synced: 21 Jun 2026
https://github.com/ejikeugba/gofcat
Goodness-of-fit tests for categorical response models
brant-test brier-scores hosmer-lemeshow-test likelihood-ratio-test lipsitz-test log-loss-score-metric logistic-regression misclassification ordinal-regression proportional-odds-test pseudo-r2 pulkstenis-robinson-test
Last synced: 21 Jun 2026
https://github.com/palaimon/ipyannotator/
the infinitely hackable annotation framework
annotation-tool annotations hacktoberfest ipycanvas ipywidgets labeling labeling-tool nbdev voila
Last synced: 21 Jun 2026
https://github.com/valentineap/pyprop8
A lightweight Python code to calculate the seismic response of a layered half-space (including static components), and derivatives of the wavefield wrt source components.
Last synced: 21 Jun 2026
https://github.com/matthiasdemuzere/w2w
A python tool that ingests WUDAPT information into WRF.
Last synced: 21 Jun 2026
https://github.com/mne-tools/mne-icalabel
Automatic labeling of ICA components in Python.
eeg ica neuroscience python
Last synced: 21 Jun 2026
https://github.com/floodlight-sports/floodlight
Python package for streamlined analysis of sports data.
python sports-analytics sports-stats
Last synced: 21 Jun 2026
https://github.com/travisseymour/EPICpy
Cross Platform Python Interface for EPIC modeling using a C++ EPIClib backend
Last synced: 21 Jun 2026
https://github.com/cicirello/rho-mu
ρμ - a Java library of Randomization enHancements and Other Math Utilities
binomial cauchy gaussian pseudorandom random-numbers randomization randomizer
Last synced: 21 Jun 2026
https://github.com/E3SM-Project/gdess
Tool for evaluating atmospheric carbon dioxide concentrations as simulated by Earth system models
data-visualization earth-observation earth-system-model model-diagnostics python
Last synced: 21 Jun 2026
https://github.com/gasparl/possa/
POSSA: Power simulation for sequential analyses and multiple hypotheses.
multiple-testing r r-pkg sequential-analyses sequential-design statistical-analysis
Last synced: 21 Jun 2026
https://github.com/MonashSmartStructures/ospgrillage
`ospgrillage` is a package that wraps `OpenSeesPy` with an interface dedicated to the development and analysis of regular bridge deck grillage models.
bridge-engineering bridges finite-element-analysis structural-analysis structural-engineering
Last synced: 21 Jun 2026
https://github.com/jmcbroome/BTE
Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit
Last synced: 21 Jun 2026
https://github.com/vsoch/citelang
markdown syntax and credit system for software!
citation credit doi publication research-software-engineering rseng
Last synced: 21 Jun 2026
https://github.com/alexriss/SpmImageTycoon.jl
Organize Scanning Probe Microscopy (SPM, STM, AFM) Images and Spectra.
afm electron javascript julia julialang spectroscopy spm stm
Last synced: 21 Jun 2026
https://github.com/r-causal/tipr
An R package for conducting sensitivity analyses for unmeasured confounders
Last synced: 21 Jun 2026
https://github.com/NatLabRockies/graph-env
Reinforcement learning for combinatorial optimization over directed graphs
graph-algorithms gym-environment machine-learning python ray reinforcement-learning
Last synced: 21 Jun 2026
https://github.com/glottospace/glottospace
Geospatial analysis of linguistic data
Last synced: 21 Jun 2026
https://github.com/wasserman-group/pyCADMium
Solve the Kohn-Sham equations on a prolate spheroidal grid.
Last synced: 22 Jun 2026
https://github.com/n8thangreen/BCEA/
Bayesian Cost Effectiveness Analysis. Given the results of a Bayesian model (possibly based on MCMC) in the form of simulations from the posterior distributions of suitable variables of costs and clinical benefits for two or more interventions, produces a health economic evaluation. Compares one of the interventions (the "reference") to the others ("comparators"). Produces many summary and plots to analyse the results
bayesian cost-effectiveness
Last synced: 21 Jun 2026
https://github.com/JuliaDynamics/TimeseriesSurrogates.jl
A Julia package for generating timeseries surrogates
hacktoberfest hypothesis-testing julia nonlinear-time-series surrogate surrogates timeseries
Last synced: 21 Jun 2026
https://github.com/SolavLab/DuoDIC
Stereo 3D Digital Image Correlation (3D-DIC) MATLAB toolbox
Last synced: 21 Jun 2026
https://github.com/perfanalytics/pose2sim
Markerless kinematics with any cameras — From 2D Pose estimation to 3D OpenSim motion
3d-kinematics biomechanics blender kinematics markerless mocap motion-capture openpose opensim pose-estimation sports
Last synced: 21 Jun 2026
https://github.com/open-atmos/PyMPDATA
Numba-accelerated Pythonic implementation of MPDATA with examples in Python, Julia, Rust and Matlab
advection advection-diffusion atmospheric-modelling numba numerical-integration pde-solver pypi-package python research simulation
Last synced: 21 Jun 2026
https://github.com/JGCRI/rmap
Mapping software with pre-loaded global and local maps
mapping maps
Last synced: 21 Jun 2026
https://github.com/cosimameyer/overviewR
🔦 Easily Extracting Information About Your Data in R
package-development
Last synced: 21 Jun 2026
https://github.com/Xia-Yijie/Xponge
A lightweight and easy to customize python package to perform pre- and post-processing of molecular modelling
molecular-dynamics molecular-modelling
Last synced: 21 Jun 2026
https://github.com/TRIQS/solid_dmft
solid_dmft is a versatile python wrapper to perform DFT+DMFT calculations utilizing the TRIQS software library.
correlated-electrons dmft solid-state-physics
Last synced: 21 Jun 2026
https://github.com/nhejazi/haldensify
:package: R/haldensify: Highly Adaptive Lasso Conditional Density Estimation
causal-inference conditional-density-estimates density-estimation highly-adaptive-lasso inverse-probability-weights machine-learning nonparametric-regression propensity-score
Last synced: 21 Jun 2026
https://github.com/schochastics/netrankr
An R package for network centrality
network-analysis network-centrality r-package
Last synced: 22 Jun 2026
https://github.com/CMakePP/CMinx
Generates API documentation for CMake functions and macros
cmake documentation-tool
Last synced: 21 Jun 2026
https://github.com/ropensci/aorsf
Accelerated Oblique Random Survival Forests
data-science oblique random-forest rstats survival
Last synced: 21 Jun 2026
https://github.com/DiamondLightSource/islatu
X-ray reflectometry reduction from Diamond Light Source
Last synced: 21 Jun 2026
https://github.com/CederGroupHub/smol
Statistical Mechanics on Lattices
cluster-expansion ising-model lattice-gas materials-science monte-carlo statistical-mechanics
Last synced: 21 Jun 2026
https://github.com/firefly-cpp/NiaARM
A minimalistic framework for Numerical Association Rule Mining
association-rule-mining association-rules data-mining data-science evolutionary-algorithms swarm-intelligence
Last synced: 21 Jun 2026
https://gitlab.com/permafrostnet/teaspoon
Python for permafrost temperature data
dataset earth science geography
Last synced: 21 Jun 2026
https://github.com/enthought/vpsearch
Fast similarity search for genomic sequences via vantage-point trees
Last synced: 21 Jun 2026
https://github.com/ZeitgeberH/patchview
python toolkits and GUI for multi-patch whole-cell data analysis and visualization
data-analysis data-visualization neuroscience patch-clamp-recordings
Last synced: 21 Jun 2026
https://github.com/relf/egobox
Efficient global optimization toolbox in Rust: bayesian optimization, mixture of gaussian processes, sampling methods
gaussian-processes global-optimization latin-hypercube-sampling mixture-of-experts surrogate-models
Last synced: 21 Jun 2026
https://github.com/DiamondLightSource/volume-segmantics
A toolkit for semantic segmentation of volumetric data using PyTorch deep learning models
Last synced: 21 Jun 2026
https://github.com/hpgem/nanomesh
Python workflow tool for generating meshes from 2D and 3D image data
finite-element-methods image-processing meshing microscopy python
Last synced: 21 Jun 2026
https://github.com/SimVascular/svFSI
A multi-physics finite element solver for patient-specific blood flow simulation including fluid-structure interaction and cardiac electrophysiology
Last synced: 21 Jun 2026
https://github.com/cbrnr/mnelab
MNELAB – a GUI for MNE-Python
eeg gui ica meg mne python qt6 xdf
Last synced: 21 Jun 2026
https://github.com/VChristiaens/special
Package for spectral characterization of (sub-)stellar objects
Last synced: 21 Jun 2026
https://github.com/JorenSix/Panako
The Panako acoustic fingerprinting system.
acoustic-fingerprinting audio-processing duplicate-detection music-information-retrieval
Last synced: 21 Jun 2026
https://github.com/JulianKarlBauer/mechkit
Continuum mechanics toolkit
continuum-mechanics mechanics mechanics-of-materials python
Last synced: 21 Jun 2026
https://github.com/chocoteam/choco-solver
An open-source Java library for Constraint Programming
constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp java solver
Last synced: 21 Jun 2026
https://git.geomar.de/digital-earth/dasf/dasf-messaging-python
Python RPC wrapper for the data analytics software framework DASF **PROJECT MOVED** This repository has been moved to https://codebase.helmholtz.cloud/dasf/dasf-messaging-python and is read-only at git.geomar.de
Last synced: 21 Jun 2026
https://github.com/stinefm/relsad
A Python package for reliability assessment of modern distribution systems.
electrical-power-engineering reliability
Last synced: 21 Jun 2026
https://github.com/nikivanstein/GSAreport
Global Sensitivity reporting for Explainable AI
explainable-ai machine-learning python sensitivity-analysis
Last synced: 21 Jun 2026
https://github.com/nathanael-fijalkow/DeepSynth
DeepSynth is a general-purpose program synthesizer in the programming by example framework: the user provides a few examples as pairs of input and output, DeepSynth finds a program matching the examples.
Last synced: 21 Jun 2026
https://github.com/pymedphys/pymedphys
A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science.
dicom medical-physics radiation-oncology radiation-physics radiation-therapy radiotherapy
Last synced: 22 Jun 2026
https://github.com/moead-framework/framework
MOEA/D is a general-purpose algorithm framework. It decomposes a multi-objective optimization problem into a number of single-objective optimization sub-problems and then uses a search heuristic to optimize these sub-problems simultaneously and cooperatively.
framework modular-framework moea moead multi-objective multi-objective-optimization operations-research pypi python
Last synced: 21 Jun 2026
https://github.com/jfowkes/pycutest
Python interface to CUTEst
optimization-tools
Last synced: 22 Jun 2026
https://github.com/prioritizr/wdpar
Interface to the World Database on Protected Areas
biodiversity conservation cran data database protected-areas r r-package rstats spatial
Last synced: 21 Jun 2026
https://github.com/jmejia8/Metaheuristics.jl
High-performance metaheuristics for optimization coded purely in Julia.
constrained-optimization decision-making differential-evolution hypervolume multi-objective-optimization nsga2 optimization pso simulated-annealing
Last synced: 21 Jun 2026
https://github.com/riatelab/osrm/
Interface between R and the OpenStreetMap-based routing service OSRM
cran openstreetmap osrm r r-package shortest-paths travel
Last synced: 22 Jun 2026
https://github.com/lanl/scico
Scientific Computational Imaging COde
admm computational-imaging convex-optimization fista inverse-problems jax optimization plug-and-play-priors proximal-algorithms proximal-operators total-variation
Last synced: 21 Jun 2026
https://github.com/Qiskit/rustworkx
A high performance Python graph library implemented in Rust.
dag graph graph-theory python rust
Last synced: 22 Jun 2026
https://github.com/klb2/qmkpy
Python testbed for the Quadratic Multiple Knapsack Problem (QMKP)
knapsack-problem multiple-knapsack-problem operations-research optimization python qmkp qmkpy quadractic-multiple-knapsack-problem quadratic-knapsack-problem
Last synced: 21 Jun 2026
https://github.com/RECETOX/MSMetaEnhancer
Tool for mass spectra metadata annotation.
annotations hacktoberfest mass-spectrometry python usegalaxy
Last synced: 21 Jun 2026
https://github.com/Beuth-Erdelt/DBMS-Benchmarker
DBMS-Benchmarker is a Python-based application-level blackbox benchmark tool for Database Management Systems (DBMS). It connects to a given list of DBMS (via JDBC) and runs a given list of parametrized and randomized (SQL) benchmark queries. Evaluations are available via a Python interface and on an interactive multi-dimensional dashboard.
agplv3 benchmarking dbms jdbc python sql
Last synced: 21 Jun 2026
https://github.com/bancaditalia/black-it/
Black-box abm calibration kit by the Bank of Italy
agent-based agent-based-modeling agent-based-simulation calibration-toolbox optimization
Last synced: 21 Jun 2026
https://github.com/kevin218/Eureka
Eureka! is a data reduction and analysis pipeline intended for time-series observations with JWST and HST.
exoplanets jwst python
Last synced: 22 Jun 2026
https://gitlab.com/ags-data-format-wg/ags-python-library
[Documentation](https://ags-data-format-wg.gitlab.io/ags-python-library/index.html) | A library to read and write AGS files using Pandas DataFrames
Geotechnics geology geospatial geotechnical openml python
Last synced: 21 Jun 2026
https://github.com/LTLA/basilisk
Clone of the Bioconductor repository for the basilisk package.
bioconductor-package
Last synced: 21 Jun 2026
https://github.com/BirolLab/btllib
📚Bioinformatics Technology Lab common code library
algorithms bioinformatics bloom-filter cpp data-structures genome library python
Last synced: 21 Jun 2026
https://github.com/chmarti1/PYroMat
PYroMat thermodynamic properties in Python
python thermodynamic-properties thermodynamics
Last synced: 21 Jun 2026
https://github.com/DominiqueMaucieri/quadcleanR
quadcleanR: A customizable tool to clean up ecological data collected from quadrats.
Last synced: 21 Jun 2026
https://github.com/giotto-ai/giotto-deep
Deep learning made topological.
computational-geometry deep-learning image-processing nlp pytorch tda
Last synced: 21 Jun 2026
https://github.com/ashleychontos/pySYD
automated measurements of global asteroseismic parameters
asteroseismology fundamental-stellar-properties k2 kepler python stars tess
Last synced: 21 Jun 2026
https://github.com/cwentland0/perform
One-dimensional unsteady compressible reacting flow simulation framework, designed for simple prototyping and testing of novel reduced-order model methods.
reacting-flow-simulations reduced-order-modeling
Last synced: 21 Jun 2026
https://github.com/minaskar/pocomc
pocoMC: A Python implementation of Preconditioned Monte Carlo for accelerated Bayesian Computation
astronomy astrophysics bayesian-inference black-box-bayesian-inference cosmology cosmology-inference general-purpose inference machine-learning mcmc mcmc-sampler normalizing-flows probabilistic-data-analysis python sampling sampling-methods smc
Last synced: 21 Jun 2026
https://github.com/Ajstros/pyripherals
Python solution for communicating with peripheral ICs
Last synced: 21 Jun 2026
https://github.com/watts-dev/watts
Workflow and Template Toolkit for Simulation (WATTS)
mcnp nuclear-energy openmc python simulation templates workflow-automation
Last synced: 21 Jun 2026
https://github.com/zizroc/villager
villager is an extensible agent based modeling (ABM) framework for the R language. It supports agents, agent aggregations and their associated resources, as well as flexible data management.
abm agent-based-modeling simulation
Last synced: 21 Jun 2026
