Ecosyste.ms: Summary

https://github.com/hsci-r/finnish-media-scrapers

Scrapers for extracting articles from major Finnish journalistic media outlets

Last synced: 21 Jun 2026

https://github.com/hcdenbakker/sepia

taxonomic classifier based on the kraken2 algorithms and more

Last synced: 21 Jun 2026

https://github.com/mikegrudic/pytreegrav

Fast N-body gravitational force and potential in Python

Last synced: 21 Jun 2026

https://github.com/jorittmo/singcar

singcar: A package for statistically comparing single cases to normative controls

Last synced: 21 Jun 2026

https://github.com/BritishGeologicalSurvey/pyvolcans

Python tool to identify analogue volcanoes via VOLCANS (https://doi.org/10.1007/s00445-019-1336-3)

Last synced: 21 Jun 2026

https://github.com/embodied-computation-group/systole/

Systole: A python package for cardiac signal synchrony and analysis

biosignals bokeh electrocardiography heart-rate-variability hrv oximeter photoplethysmography physiological-signals ppg psychology-experiments psychophysiology

Last synced: 21 Jun 2026

https://github.com/nhejazi/medoutcon

:package: R/medoutcon: Efficient Causal Mediation Analysis with Natural and Interventional Direct/Indirect Effects

causal-inference causal-machine-learning inverse-probability-weights machine-learning mediation-analysis r r-package stochastic-interventions targeted-learning treatment-effects

Last synced: 21 Jun 2026

https://github.com/ElectionDataAnalysis/electiondata

Tools for consolidation and analysis of raw election results from the most reliable sources -- the election agencies themselves.

common-data-format election election-data

Last synced: 21 Jun 2026

https://github.com/JuliaOcean/AIBECS.jl

The ideal tool for exploring global marine biogeochemical cycles.

awesome biogeochemical biogeochemical-model biogeochemistry fluxes global inverse-model julia marine marine-tracer model modeling models ocean ocean-circulation oceanography optimization pathways tracer transport

Last synced: 21 Jun 2026

https://github.com/JLBLine/WODEN

CUDA code designed to simulate interferometric data using point, Gaussian, and shapelet sky models

Last synced: 21 Jun 2026

https://github.com/shirtsgroup/physical_validation

Physical validation of molecular simulations

molecular-dynamics molecular-mechanics molecular-simulation physical-validation python

Last synced: 21 Jun 2026

https://github.com/esteinig/nanoq

Minimal but speedy quality control for nanopore reads in Rust :bear:

Last synced: 21 Jun 2026

https://github.com/thejasvibr/bat_beamshapes

Directivity functions for various sound sources

acoustics beamshape bioacoustics directivity sound

Last synced: 21 Jun 2026

https://github.com/stammler/simframe

Python framework for setting up and running scientific simulations. It comes with a variety of integration schemes and some infrastructure of reading and writing data files.

differential-equations python science simulation

Last synced: 22 Jun 2026

https://github.com/Yu-Group/veridical-flow

Making it easier to build stable, trustworthy data-science pipelines based on the PCS framework.

ai data-science ensembling machine-learning ml pandas preprocessing python3 stability statistics tutorial workflow

Last synced: 21 Jun 2026

https://github.com/GaryBAYLOR/mixR

R package for fitting finite mixture models for both raw and binned data

Last synced: 21 Jun 2026

https://github.com/ropensci/terrainr

Get DEMs and orthoimagery from the USGS National Map, georeference your images and merge rasters, and visualize with Unity 3D

cran datasets dems map map-tiles mapping national-map nhd orthoimagery peer-reviewed progressr r r-package retrieve-data rstats terrainr unity unity-rendering-engine usgs

Last synced: 21 Jun 2026

https://github.com/neuralgraphs/diman

A Clojure library for applying dimensional analysis.

Last synced: 21 Jun 2026

https://github.com/nimble-dev/compareMCMCs/

Tools for comparing MCMC efficiency from nimble and/or other engines

Last synced: 21 Jun 2026

https://github.com/siara-cc/Unishox2

Compression for Unicode short strings (works on arduino)

arduino bandwidth-saver chat-message-compression cloud-cost-intelligence compression cost-optimization database-compression iot json-compression lora lorawan message-compression short-message-compression short-string sms-compression storage-saving string-compression string-compression-algorithms xml-compression

Last synced: 22 Jun 2026

https://gitlab.com/pyFBS/pyFBS

A Python package for Frequency Based Substructuring and Transfer Path Analysis

3D viewer FRF synthetisation MCK model System Equivalent Modal Mixing Virtual Point Transformation

Last synced: 21 Jun 2026

https://github.com/TeamCOMPAS/COMPAS

COMPAS rapid binary population synthesis code

Last synced: 22 Jun 2026

https://github.com/UCD4IDS/WaveletsExt.jl

A Julia extension package to Wavelets.jl

ac-wavelets filter julia signal-processing stationary-wavelets wavelet wavelet-transform

Last synced: 21 Jun 2026

https://github.com/multiply-org/sar-pre-processing

This is the MULTIPLY repository containing the functionality for SAR pre processing.

Last synced: 21 Jun 2026

https://github.com/cseptesting/pycsep

Tools to help earthquake forecast model developers build and evaluate their forecasts

Last synced: 22 Jun 2026

https://github.com/genome/bam-readcount

Count bases in BAM/CRAM files

Last synced: 21 Jun 2026

https://github.com/alan-turing-institute/Palaeoanalytics

Repository for the Paleoanalytics project.

hut23 hut23-530

Last synced: 21 Jun 2026

https://github.com/JGCRI/rfasst

Estimation of a consistent range of adverse health and agricultural effects attributable to air pollution for a GCAM scenario

Last synced: 21 Jun 2026

https://github.com/mbhall88/rasusa

Randomly subsample sequencing reads or alignments

alignment bam bioinformatics coverage downsample fasta fastq genome-analysis random rust subsampling

Last synced: 22 Jun 2026

https://github.com/delve-team/delve

PyTorch model training and layer saturation monitor

convolutional-neural-networks deep-learning layer-saturation model-training neural-dynamics pruning pytorch training-monitor visualization

Last synced: 21 Jun 2026

https://github.com/dynamicslab/pysindy

A package for the sparse identification of nonlinear dynamical systems from data

dynamical-systems machine-learning model-discovery nonlinear-dynamics sparse-regression system-identification

Last synced: 21 Jun 2026

https://github.com/TeamLEGWORK/LEGWORK

Package for making predictions about stellar-origin sources in space-based gravitational wave detectors

astrophysics gravitational-waves lisa python

Last synced: 22 Jun 2026

https://github.com/vishwas1984/LaplaceInterpolation.jl

Last synced: 21 Jun 2026

https://github.com/aqtech-ca/mctreesearch4j

Last synced: 21 Jun 2026

https://github.com/bramvandijk88/cacatoo

A javascript library for building, exploring, and sharing spatially structured models of biological systems

Last synced: 21 Jun 2026

https://github.com/rhenkin/visxhclust

A Shiny app and functions for visual exploration of hierarchical clustering.

clustering data-analysis data-science r r-package r-shiny rstats shiny-apps

Last synced: 21 Jun 2026

https://github.com/ImperialCollegeLondon/champ

hacktoberfest

Last synced: 22 Jun 2026

https://github.com/UNSW-CEEM/nempy

A Python package for modelling the Australian National Electricity Market dispatch procedure

Last synced: 21 Jun 2026

https://github.com/JuliaManifolds/Manopt.jl

🏔️Optimization on Riemannian Manifolds in Julia

julia manifolds manopt optimization

Last synced: 22 Jun 2026

https://github.com/Lightning-AI/torchmetrics

Machine learning metrics for distributed, scalable PyTorch applications.

analyses data-science deep-learning machine-learning metrics python pytorch

Last synced: 22 Jun 2026

https://github.com/SamDuffield/bmm

Map-matching using particle smoothing methods.

Last synced: 21 Jun 2026

https://github.com/ocean-eddy-cpt/gcm-filters

Diffusion-based Spatial Filtering of Gridded Data

Last synced: 22 Jun 2026

https://github.com/JuliaSmoothOptimizers/DCISolver.jl

Last synced: 21 Jun 2026

https://github.com/kostergroup/SIMsalabim

A 1D drift-diffusion simulator for semiconductor devices (LEDs, solar cells, diodes, organics, perovskites)

Last synced: 21 Jun 2026

https://gitlab.kitware.com/LBM/lattice-boltzmann-solver

Last synced: 21 Jun 2026

https://github.com/metawards/MetaWards

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

coronavirus covid covid-19 epidemic-model epidemic-simulations epidemics epidemiology epidemiology-analysis sir-model

Last synced: 21 Jun 2026

https://github.com/mne-tools/mne-python

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

ecog eeg electrocorticography electroencephalography machine-learning magnetoencephalography meg neuroimaging neuroscience python statistics visualization

Last synced: 22 Jun 2026

https://github.com/elwinter/nnde

nnde is a package of Python modules which implement a set of neural networks which solve ordinary and partial differential equations. This code is based on the previous package, nnode.

Last synced: 22 Jun 2026

https://github.com/JuliaQX/QXTools.jl

Julia package for quantum circuit simulation using tensor networks

Last synced: 21 Jun 2026

https://github.com/devsim/devsim

TCAD Semiconductor Device Simulator

c-plus-plus devsim finite-volume pde python semiconductor semiconductor-physics tcad tcad-device-simulator

Last synced: 21 Jun 2026

https://gitlab.com/picos-api/picos

A Python interface to conic optimization solvers.

math optimization python

Last synced: 21 Jun 2026

https://github.com/volkamerlab/opencadd

A Python library for structural cheminformatics

Last synced: 22 Jun 2026

https://github.com/alexander-pastukhov/bistablehistory

A package to compute a cumulative history for time-series of perceptual dominance in bistable displays.

Last synced: 21 Jun 2026

https://github.com/pybamm-team/liionpack

A battery pack simulation tool that uses the PyBaMM framework

Last synced: 22 Jun 2026

https://github.com/villano-lab/nrCascadeSim

calculating the NR spectrum resulting from neutron-capture cascades.

Last synced: 21 Jun 2026

https://github.com/dankelley/oce

R package for oceanographic processing

oceanography r

Last synced: 21 Jun 2026

https://github.com/inpefess/gym-saturation

a collection of Gymnasium environments for saturation provers

Last synced: 21 Jun 2026

https://github.com/symmy596/SurfinPy

Thermodynamic Phase Diagram Generator

density-functional-theory thermodynamic-properties

Last synced: 21 Jun 2026

https://github.com/Magritte-code/Magritte

A modern software library for simulating radiation transport.

astrophysics physics-simulation radiative-transfer

Last synced: 21 Jun 2026

https://github.com/ni1o1/transbigdata

A Python package develop for transportation spatio-temporal big data processing, analysis and visualization.

bike-sharing-data bus-gps-data data-analysis data-pre-processing data-quality-analysis data-visualization geospatial-data python spatio-temporal-data taxi-gps-data transportation

Last synced: 21 Jun 2026

https://github.com/PopMedNet-Team/popmednet

This is the repository for the open source code of the distributed data network platform PopMedNet

Last synced: 22 Jun 2026

https://github.com/neuralhydrology/neuralhydrology

Python library to train neural networks with a strong focus on hydrological applications.

Last synced: 21 Jun 2026

https://github.com/PolymerGuy/recolo

Load reconstuction using virtual fields

Last synced: 21 Jun 2026

https://github.com/jiahecui/SenAOReFoc

A closed-loop sensorbased adaptive optics and remote focusing control software that works with a deformable mirror and a Shack-Hartmann wavefront sensor.

Last synced: 21 Jun 2026

https://github.com/gyorilab/pybiopax

PyBioPAX: A python implementation of the BioPAX object model

biology biopax python systems-biology

Last synced: 21 Jun 2026

https://github.com/jhollist/nsink

eutrophication nitrogen ord rstats sf terra water

Last synced: 21 Jun 2026

https://github.com/rickhelmus/patRoon

Workflow solutions for mass-spectrometry based non-target analysis.

mass-spectrometry non-target r

Last synced: 22 Jun 2026

https://github.com/EISy-as-Py/hardy

Handling Arbitrary Recognition of Data! y not?

Last synced: 21 Jun 2026

https://github.com/mcsiple/mmrefpoints

A package for simulating marine mammal abundance and calculating reference points.

bycatch fisheries-management marine-mammals r shiny

Last synced: 21 Jun 2026

https://github.com/ArkajyotiSaha/RandomForestsGLS

Last synced: 21 Jun 2026

https://gitlab.com/sissopp_developers/sissopp

C++ implementation of sisso.

Last synced: 21 Jun 2026

https://github.com/coleygroup/pyscreener

pythonic interface to virtual screening software

computational-biology distributed-computing molecular-docking ray virtual-screening

Last synced: 21 Jun 2026

https://github.com/TriPed-Robot/trip_kinematics

Python package for inverse kinematic calculations of hybrid serial parallel robots

closed-chain hybrid-chain inverse-kinematics kinematic-modeling kinematics manipulator parallel-robot python robotics serial-robotics trajectory-planning

Last synced: 21 Jun 2026

https://github.com/leprojetcastor/castor

Last synced: 21 Jun 2026

https://github.com/aliaksei135/seedpod_ground_risk/

Ground Risk model for UAS flight path analysis and risk-aware path finding

drone drones ground-risks population-model risk-analysis risk-modelling uas uav unmanned-aerial-system

Last synced: 21 Jun 2026

https://github.com/csdms/babelizer/

Transform BMI-wrapped models into Python packages

bmi c csdms cxx fortran hacktoberfest pymt python

Last synced: 22 Jun 2026

https://code.usgs.gov/umesc/quant-ecology/fishstan/

Version 2+ of the fishStan package.

Last synced: 21 Jun 2026

https://github.com/finagle29/DBSP_DRP/

Fully-automated data reduction pipeline for DBSP built with PypeIt

Last synced: 21 Jun 2026

https://github.com/FSEC-Photovoltaics/pvrpm-lcoe

PV Simulation using SAM and Python

Last synced: 21 Jun 2026

https://github.com/AlphonsG/Rainbow-Optical-Flow-For-ALI

Automated air liquid interface cell culture analysis using deep optical flow.

bioinformatics biology deep-learning image-analysis optical-flow python pytorch

Last synced: 21 Jun 2026

https://github.com/chchch/sanskrit-alignment/

Sequence alignment and textual reconstruction for Sanskrit texts

haskell javascript philology phylogeny sequence-alignment

Last synced: 21 Jun 2026

https://github.com/arcaldwell49/SimplyAgree

A simple R package for calculating absolute agreement and estimating required sample sizes for studies of absolute agreement

Last synced: 21 Jun 2026

https://github.com/florisvb/PyNumDiff

Methods for numerical differentiation of noisy data in python

Last synced: 21 Jun 2026

https://github.com/QEC-pages/QDistRnd/

quantum-computing

Last synced: 21 Jun 2026

https://github.com/octopus-sensing/octopus-sensing

eeg experience-scenarios gsr ppg questionnaire shimmer

Last synced: 21 Jun 2026

https://github.com/FZJ-IEK3-VSA/LoadProfileGenerator

Program for generating load curves for residential consumers. Agentbased and extremly detailed.

Last synced: 21 Jun 2026

https://github.com/ggciag/mandyoc

MANDYOC is a finite element code written on top of the PETSc library to simulate thermo-chemical convection of the Earth's mantle

Last synced: 21 Jun 2026

https://github.com/ColemanRHarris/mxnorm

R package to normalize multiplexed imaging data.

cran package r

Last synced: 21 Jun 2026

https://github.com/glasgowcompbio/vimms/

A programmable and modular LC/MS simulator in Python

dda fragmentation metabolomics python simulation

Last synced: 21 Jun 2026

https://github.com/PaulSt/NGSTrefftz

Add-On to NGSolve for Trefftz methods

finite-element-method numerical-methods open-source trefftz-methods

Last synced: 21 Jun 2026

https://github.com/BjoernBiltzinger/pyspi

Pure python tools for interfacing with INTEGRAL SPI data. It also provides a 3ML plugin for performing full forward folding spectral analysis of GRBs. The documentation with a few examples is available at https://pyspi.readthedocs.io/.

3ml python spi-data

Last synced: 21 Jun 2026