https://github.com/PoisotLab/EcologicalNetworks.jl
Everything you've never dreamed about measuring on ecological networks.
ecology julia networks
Last synced: 21 Jun 2026
https://github.com/PyPortfolio/PyPortfolioOpt
Financial portfolio optimisation in python, including classical efficient frontier, Black-Litterman, Hierarchical Risk Parity
algorithmic-trading covariance efficient-frontier finance financial-analysis investing investment investment-analysis portfolio-management portfolio-optimization python quantitative-finance
Last synced: 21 Jun 2026
https://github.com/bcgov/bcdata
An R package for searching & retrieving data from the B.C. Data Catalogue
bcdc citz data-science env r r-package rstats
Last synced: 21 Jun 2026
https://github.com/vprusso/toqito
|toqito> (Theory of Quantum Information Toolkit) is a Python library for research in quantum information theory.
convex-optimization linear linear-algebra matrix-analysis nonlocal-game physics python python-3 python3 quantum quantum-computing quantum-information quantum-information-science quantum-information-theory quantum-physics quantum-programming quantum-programming-language research semidefinite-programming unitaryhack
Last synced: 21 Jun 2026
https://github.com/icecube/FIRESONG
FIRst Extragalactic Simulation Of Neutrino and Gamma-ray
Last synced: 21 Jun 2026
https://github.com/cdslaborg/paramonte
ParaMonte: Parallel Monte Carlo and Machine Learning Library for Python, MATLAB, Fortran, C++, C.
adaptive-learning bayesian-inference bayesian-statistics c cpp fortran machine-learning machine-learning-algorithms machine-learning-library markov-chain matlab mcmc monte-carlo monte-carlo-simulations mpi numerical-integration openmp python sampling
Last synced: 21 Jun 2026
https://github.com/D-K-E/graphical-models/
Probabilistic Graphical Models from Scratch with support for LWF Chain Graphs
chain-graph graphical-models pgm python3
Last synced: 21 Jun 2026
https://github.com/SteveMacenski/slam_toolbox
Slam Toolbox for lifelong mapping and localization in potentially massive maps with ROS
Last synced: 21 Jun 2026
https://github.com/SchlossLab/mikropml
User-Friendly R Package for Supervised Machine Learning Pipelines
machine-learning r-package rstats
Last synced: 21 Jun 2026
https://github.com/zoometh/iconr
Formal methods to study Prehistory iconography
archaeology gmm graph-theory iconography network-analysis prehistoric-archaeology rpackage rproject shape-analysis
Last synced: 21 Jun 2026
https://github.com/ConorMacBride/mcalf
MCALF: Multi-Component Atmospheric Line Fitting
astronomy python solar solar-physics sun
Last synced: 21 Jun 2026
https://github.com/KALMUS-Color-Toolkit/KALMUS
KALMUS Color Toolkit for color analysis and visualization in film studies.
digital-humanities image-analysis pypi-package python3 video-processing
Last synced: 21 Jun 2026
https://github.com/DidierMurilloF/FielDHub
FielDHub is an R Shiny design of experiments (DOE) app that aids in the creation of traditional, unreplicated, augmented and partially replicated (p-rep) designs applied to agriculture, plant breeding, forestry, animal and biological sciences.
agricultural breeding design doe experimental plantbreeding r rstats shiny
Last synced: 21 Jun 2026
https://github.com/pnavaro/HOODESolver.jl
High Oscillatory Ordinary Differential Equation Solver in Julia
adams-bashforth-methods fft high-oscillatory julia ode-solver
Last synced: 21 Jun 2026
https://github.com/twosixlabs/magicwand-datatool
Magicwand tool to generate tcp traffic data
Last synced: 21 Jun 2026
https://github.com/IndrajeetPatil/statsExpressions
Tidy data frames and expressions with statistical summaries 📜
bayesian-inference bayesian-statistics contingency-table correlation effectsize meta-analysis parametric robust robust-statistics statistical-details statistical-tests tidy
Last synced: 21 Jun 2026
https://github.com/SMTG-Bham/surfaxe
Dealing with slabs for first principles calculations of surfaces
computational-chemistry materials pymatgen python3 science surfaces vasp
Last synced: 21 Jun 2026
https://github.com/VNNikolaidis/nnlib2Rcpp
An R package for Neural Nets created using nnlib2
Last synced: 21 Jun 2026
https://github.com/firefly-cpp/NiaAML
A Python AutoML framework that automatically composes and optimizes machine-learning pipelines using nature-inspired algorithms.
automl classification classification-pipelines framework machine-learning nature-inspired-algorithms python
Last synced: 21 Jun 2026
https://github.com/IndrajeetPatil/ggstatsplot
Enhancing {ggplot2} plots with statistical analysis 📊📣
bayes-factors datascience dataviz effect-size ggplot-extension hypothesis-testing non-parametric-statistics r regression-models statistical-analysis
Last synced: 21 Jun 2026
https://github.com/yaml2sbml-dev/yaml2sbml
Tool to convert an ODE model specified in the YAML format to SBML.
ode ode-model petab sbml yaml
Last synced: 21 Jun 2026
https://github.com/exafmm/exafmm-t
A kernel-independent fast multipole method library with Python interface.
Last synced: 21 Jun 2026
https://github.com/andreasmang/claire
Constrained Large Deformation Diffeomorphic Image Registration (CLAIRE)
image-registration medical-image-computing parallel-computing
Last synced: 21 Jun 2026
https://github.com/netsiphd/netrd
A library for network {reconstruction, distances, dynamics}
Last synced: 21 Jun 2026
https://github.com/pysal/spaghetti
SPAtial GrapHs: nETworks, Topology, & Inference
gis graph-theory network-analysis pysal python spatial-network topology
Last synced: 21 Jun 2026
https://github.com/ropensci/dataaimsr
Australian Institute of Marine Science (AIMS) Data Platform API Client which provides easy access to AIMS Data Platform scientific data and information.
aims australia data marine monitoring sst weather
Last synced: 21 Jun 2026
https://github.com/0xCoto/Virgo
📡 Virgo: A Versatile Spectrometer for Radio Astronomy
astronomy astrophysics radio radio-astronomy radio-telescope rf rfi-mitigation sdr spectrometer telescope virgo
Last synced: 21 Jun 2026
https://github.com/AlexanderFabisch/gmr
Gaussian Mixture Regression
gaussian-mixture-models machine-learning python regression
Last synced: 21 Jun 2026
https://github.com/tobiasschoch/wbacon
Weighted BACON algorithms
outlier outlier-detection r-package robust-regression statistics
Last synced: 21 Jun 2026
https://github.com/LangeJens/CliquePercolation
Developmental Version of R package CliquePercolation
Last synced: 21 Jun 2026
https://github.com/cjbarrie/academictwitteR
Repo for academictwitteR package to query the Twitter Academic Research Product Track v2 API endpoint.
r r-package twitter twitter-api
Last synced: 21 Jun 2026
https://github.com/damcb/tyssue
An epithelium simulation library
biological-simulations geometry notebook pandas vertex
Last synced: 21 Jun 2026
https://github.com/fitbenchmarking/fitbenchmarking
Tool for comparing the run time and accuracy of minimizers on fit benchmarking problems
Last synced: 21 Jun 2026
https://github.com/sibirrer/lenstronomy
multi-purpose lens modeling software package
Last synced: 21 Jun 2026
https://github.com/davemlz/eemont
A python package that extends Google Earth Engine.
earth-engine geographic-information-systems gis google google-earth-engine python python3 raster remote-sensing satellite-imagery satellite-images spectral-indices
Last synced: 21 Jun 2026
https://github.com/hansenjohnson/WhaleMap
Collate and visualize whale survey results in the NW Atlantic
Last synced: 21 Jun 2026
https://github.com/mjacob1002/Eir
Eir is a package that helps researchers simulate the spread of epidemics, mainly focusing on discrete-time Markovian spatial models.
Last synced: 21 Jun 2026
https://github.com/shihyuntang/igrins_rv
Welcome to IGRINS RV, a open source pipeline for extracting radial velocity (RV) for the Immersion GRating INfrared Spectrometer (IGRINS) instrument. Please contact asa.stahl@rice.edu or sytang@lowell.edu for more detail.
Last synced: 21 Jun 2026
https://github.com/barbagroup/geoclaw-landspill
An oil land-spill and overland flow simulator for pipeline rupture events
geoclaw land-spill overland-flow pipeline pipeline-ruptures shallow-water-equations
Last synced: 21 Jun 2026
https://github.com/bootphon/pygamma-agreement/
Gamma Agreement in Python
agreement annotation-tool annotations gamma-agreement natural-language-processing speech
Last synced: 21 Jun 2026
https://github.com/openscm/openscm-twolayermodel
Implementations of two-layer models by Held et al. and Geoffroy et al.
Last synced: 21 Jun 2026
https://github.com/vavrines/Kinetic.jl
Universal modeling and simulation of fluid mechanics upon machine learning. From the Boltzmann equation, heading towards multiscale and multiphysics flows.
boltzmann-equation cfd deep-learning differential-equations finite-element-methods finite-volume fluid-dynamics julia kinetic-theory numerical-pdes pde plasma rarefied-gas-dynamics scientific-machine-learning sciml
Last synced: 21 Jun 2026
https://github.com/dansarie/sboxgates
Program for finding low gate count implementations of S-boxes.
cryptanalysis cuda logic-circuit mpi
Last synced: 21 Jun 2026
https://bitbucket.org/sciencecapsule/sciencecapsule
Core ScienceCapsule repository
Last synced: 21 Jun 2026
https://github.com/exoplanet-dev/exoplanet
Fast & scalable MCMC for all your exoplanet needs!
astronomy astrophysics bayesian-inference exoplanet exoplanet-radial-velocities exoplanet-transits exoplanets gaussian-processes mcmc pymc3 time-series time-series-analysis
Last synced: 21 Jun 2026
https://github.com/Planet-AI-GmbH/tfaip
Python-based research framework for developing, organizing, and deploying Deep Learning models powered by Tensorflow.
Last synced: 21 Jun 2026
https://github.com/egonw/bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
bioclipse bioinformatics blueobelisk cheminformatics excel hacktoberfest rdf
Last synced: 21 Jun 2026
https://github.com/DedalusProject/eigentools
The Eigentools package for Dedalus
Last synced: 21 Jun 2026
https://github.com/RTIInternational/gobbli
Deep learning with text doesn't have to be scary.
deep-learning docker nlp python
Last synced: 21 Jun 2026
https://github.com/PyPSA/atlite
atlite: A Lightweight Python Package for Calculating Renewable Power Potentials and Time Series
csp dynamic-line-rating energy energy-system energy-systems era5 gis heat-pump potentials pv python reanalysis renewable-energy renewable-timeseries solar wind
Last synced: 21 Jun 2026
https://github.com/IMMM-SFA/mosartwmpy
Python translation of MOSART-WM: a water routing and management model
Last synced: 21 Jun 2026
https://github.com/DrMarc/slab
python classes for working with sounds and conducting psychoacoustic experiments
audio psychoacoustics sound
Last synced: 21 Jun 2026
https://github.com/geospace-code/h5fortran
Lightweight HDF5 polymorphic Fortran: h5write() h5read()
fortran hdf5 object-oriented-fortran
Last synced: 21 Jun 2026
https://github.com/reizio/reiz.io
Structural Source Code Search Engine
ast-matcher python-ast search-engine source source-code
Last synced: 21 Jun 2026
https://github.com/ekaterinailin/AltaiPony
Find flares in Kepler and TESS light curves. Notebooks for quickstart inside.
Last synced: 21 Jun 2026
https://github.com/datalad/datalad
Keep code, data, containers under control with git and git-annex
closember data-storage dataset git-annex python usable
Last synced: 21 Jun 2026
https://github.com/CEED/libCEED
CEED Library: Code for Efficient Extensible Discretizations
api ceed cuda ecp exascale-computing gpu high-order high-performance-computing hpc julia linear-algebra
Last synced: 21 Jun 2026
https://github.com/AMReX-Astro/Nyx
An adaptive mesh, N-body hydro cosmological simulation code
amrex cosmology
Last synced: 21 Jun 2026
https://github.com/david-barnett/microViz
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
microbiome microbiome-analysis microbiota r rstats
Last synced: 21 Jun 2026
https://github.com/virgesmith/neworder
A dynamic microsimulation framework for python
cplusplus-20 markov-chain microsimulation monte-carlo mpi numpy pandas pybind11 python3
Last synced: 21 Jun 2026
https://github.com/rodluger/starry_process
interpretable gaussian processes for stellar light curves
gaussian-processes lightcurves stars timeseries-analysis
Last synced: 21 Jun 2026
https://github.com/DrDaveShaw/INCHEM-Py
The INdoor CHEMical model in Python (INCHEM-Py) is an open source and accessible box-model built to give researchers deeper insight into the chemical mechanisms behind indoor air chemistry.
Last synced: 21 Jun 2026
https://github.com/tramarobin/fctSnPM
Using spm1d package (v.0.4.3), compute anova and post-hoc tests from anova1 to anova3rm, with a non-parametric approach (permutation tests)
Last synced: 21 Jun 2026
https://github.com/epiforecasts/covidregionaldata
An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets.
covid-19 data open-science r6 regional-data rstats
Last synced: 21 Jun 2026
https://github.com/glotzerlab/coxeter
Collection of tools to help initialize and manipulate geometries in two and three dimensions.
computational-geometry geometry physics polygons polyhedra shapes
Last synced: 21 Jun 2026
https://github.com/grburgess/popsynth
A generic flux/parameter population synthesis code
astronomy astrophysics population population-synthesis simulation statistics
Last synced: 21 Jun 2026
https://github.com/lumen-org/lumen
Interactive web application for the exploration, comparision and validation of probability models and its data
web-application
Last synced: 21 Jun 2026
https://github.com/traja-team/traja
Python tools for spatial trajectory and time-series data analysis
animal-behavior python spatial-data-analysis time-series-analysis trajectory-analysis
Last synced: 22 Jun 2026
https://github.com/pratheesh3780/grapesAgri1
Collection of shiny apps for Agricultural research Data Analysis. Allows user to have graphical user interface to perform analysis of Agricultural experimental data. On using the functions in this package a Graphical User Interface will pop up. Apps Works by simple upload of files in CSV format.
Last synced: 21 Jun 2026
https://github.com/kutaslab/fitgrid
Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data
eeg python regression
Last synced: 21 Jun 2026
https://github.com/WatsonGroupTCD/J2suscep
See https://github.com/WatsonGroupTCD/J2suscep/wiki
Last synced: 21 Jun 2026
https://github.com/groupmm/libfmp
A Python package for teaching and learning Fundamentals of Music Processing (FMP)
audio beat chord dtw f0 fourier hmm mir music nmf onset processing python retrieval synchronization tempo
Last synced: 21 Jun 2026
https://github.com/hknd23/idcempy
Inflated Discrete Choice Models
discrete-choice mixture-model multinomial-logistic-regression ordered-probit-regression
Last synced: 21 Jun 2026
https://github.com/singularityhub/singularity-hpc
Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.
containers hpc lmod reproducibility singularity
Last synced: 21 Jun 2026
https://github.com/adithirgis/pollucheck
This application helps exploring the open source air quality data.
Last synced: 21 Jun 2026
https://github.com/uDALES/u-dales
uDALES: large-eddy-simulation software for urban flow, dispersion and microclimate modelling
cfd computational-fluid-dynamics large-eddy-simulation urban-climate
Last synced: 21 Jun 2026
https://github.com/PhilBoileau/cvCovEst
An R package for nonparametric covariance matrix estimation in high dimensions
covariance-matrix-estimation cross-validation high-dimensional-statistics nonparametric-statistics
Last synced: 21 Jun 2026
https://github.com/opengeos/leafmap
A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment
data-science dataviz folium geoparquet geopython geospatial geospatial-analysis gis ipyleaflet jupyter jupyter-notebook leafmap mapping plotly python solara streamlit streamlit-webapp whiteboxtools
Last synced: 21 Jun 2026
https://github.com/NMBU-Data-Science/RENT
Feature selection method based on repeated elastic net.
binary-classification classification elastic-net ensemble ensemble-model feature-selection regression
Last synced: 21 Jun 2026
https://github.com/SunilAnandatheertha/PXO
PXO (Poly-XTAL Operations). Generate, analyze and export complex 2D space partitions like metallic grain structures
crystallographic-orientations crystallographic-texture grain-boundaries grain-structure grains ising-model monte-carlo-simulations particle-limited-grain-growth poly-crystal potts-model texture
Last synced: 21 Jun 2026
https://github.com/fury-gl/fury
FURY - Free Unified Rendering in pYthon.
3d-graphics game-engine hacktoberfest python scientific-visualization scriptable-animations shaders simulation
Last synced: 21 Jun 2026
https://github.com/easystats/see/
:art: Visualisation toolbox for beautiful and publication-ready figures
data-visualization easystats ggplot2 hacktoberfest plotting r rstats see statistics visualisation visualization
Last synced: 21 Jun 2026
https://github.com/mlr-org/mcboost
Multi-Calibration & Multi-Accuracy Boosting for R
bias-correction bias-detection classification ethics fairness fairness-ai fairness-ml machine-learning post-processing responsible-ai
Last synced: 21 Jun 2026
https://github.com/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework
C# library that handles the full process of gathering biometric data from a body-worn sensor, transforming it into handcrafted feature vectors, and delivering an inferencing result in thirty-five lines of code.
affective-computing empatica-e4 microsoft-ml wesad
Last synced: 21 Jun 2026
https://github.com/labsquare/CutePeaks
CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI.
ab1 sanger-chromatograms scf
Last synced: 21 Jun 2026
https://github.com/ngsxfem/ngsxfem
Add-On to NGSolve for unfitted finite element discretizations (XFEM, CutFEM, TraceFEM, etc...)
Last synced: 21 Jun 2026
https://github.com/derrynknife/SurPyval
A Python package for survival analysis. The most flexible survival analysis package available. SurPyval can work with arbitrary combinations of observed, censored, and truncated data. SurPyval can also fit distributions with 'offsets' with ease, for example the three parameter Weibull distribution.
actuarial-science churn-prediction non-parametric parametric-distribution parametric-methods probability-plot reliability reliability-analysis reliability-engineering risk-analysis survival-analysis weibull
Last synced: 21 Jun 2026
https://github.com/gvegayon/rgexf/
Create, read and write GEXF (Graph Exchange XML Format) graph files (used in Gephi and others) in R.
gephi gexf gexf-graph-files r rpackage social-network xml
Last synced: 21 Jun 2026
https://github.com/xcasas/ImSwitch
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
Last synced: 21 Jun 2026
https://github.com/roshansamuel/saras
Finite-difference PDE solver
blitz computational-fluid-dynamics mpi navier-stokes-equations parallel-computing saras
Last synced: 21 Jun 2026
https://gitlab.com/marinvaders/marinvaders
The MarINvaders toolbox - a Python 3 module to assess the native and alien distribution of marine species. [Documentation](https://marinvaders.gitlab.io/marinvaders/)
aliens biodiversity invaders marine ecosystems
Last synced: 21 Jun 2026
https://github.com/barricklab/ostir
Software for predicting translation initiation rates in bacteria
bioengineering rna-structure synthetic-biology
Last synced: 21 Jun 2026
