https://github.com/AlexanderLabWHOI/EUKulele
Automatic eukaryotic taxonomic classification
Last synced: 21 Jun 2026
https://github.com/ropensci/targets
Function-oriented Make-like declarative workflows for R
data-science high-performance-computing make peer-reviewed pipeline r r-package r-targetopia reproducibility reproducible-research rstats targets workflow
Last synced: 21 Jun 2026
https://github.com/ShubhadeepSadhukhan1993/fastSF
A hybrid parallel C++ code to compute structure function of different order
Last synced: 21 Jun 2026
https://github.com/Leo-Simpson/c-lasso
c-lasso: a Python package for constrained sparse regression and classification
Last synced: 21 Jun 2026
https://framagit.org/GustaveCoste/eldam
ELsa DAta Manager - Life Cycle Assessment data management software
Data quality Life Cycle Assessment Life Cycle Inventory
Last synced: 22 Jun 2026
https://github.com/krober10nd/SeismicMesh
2D/3D serial and parallel triangular mesh generation tool for finite element methods.
distmesh meshing parallel seismic-velocity-models
Last synced: 21 Jun 2026
https://github.com/pyomeca/biorbd
Biomechanical add-ons to the RigidBody Dynamics Library
Last synced: 21 Jun 2026
https://github.com/ryokbys/nap
Nagoya Atomistic-simulation Package (NAP). Why don't you take a NAP? ;)
atomistic-simulations molecular-dynamics neural-network
Last synced: 21 Jun 2026
https://github.com/lzkelley/kalepy
Kernel Density Estimation and (re)sampling
kde kernel-density-estimation pdfs python python3 resample resampling statistical-analysis statistics
Last synced: 21 Jun 2026
https://github.com/damienmarsic/Parent-map
Analyze parental contributions to evolved or engineered protein or DNA sequences
Last synced: 21 Jun 2026
https://gitlab.com/ffaucher/hawen
time-HArmonic Wave modEling and INversion using Hybridizable Discontinuous Galerkin Discretization (hawen). The code is written in Fortran90, for forward and inverse time-harmonic wave problems. It uses mpi and openmp parallelism.
Last synced: 22 Jun 2026
https://github.com/bcgov/shinyssdtools
Shiny interface to ssdtools R package
env species-sensitivity-distribution ssd water-quality-guideline
Last synced: 21 Jun 2026
https://github.com/tudelft3d/3dfier
The open-source tool for creating 3D models
3d 3dgis citygml cityjson gis laz lidar yaml-cpp
Last synced: 21 Jun 2026
https://github.com/PoisotLab/SimpleSDMLayers.jl
Simple layers for species distribution modeling and bioclimatic data
bioclim climate-change geotiff landcover raster species-distribution-models
Last synced: 21 Jun 2026
https://github.com/Oftatkofta/cellocity
Scientific software for analysis of confluent cell dynamics.
analysis cell-dynamics microscopy microscopy-data time-series-analysis vector-analysis
Last synced: 21 Jun 2026
https://github.com/sebhaan/geobo
Python package for Multi-Objective Bayesian Optimisation and Joint Inversion
Last synced: 21 Jun 2026
https://github.com/Circuitscape/Omniscape.jl
Functions to compute omnidirectional landscape connectivity using circuit theory and the Omniscape algorithm.
animal-movement circuit-analysis circuit-theory circuitscape climate-change connectivity ecology julia-language julia-package landscape-ecology
Last synced: 21 Jun 2026
https://github.com/AlexMikes/AutoFunc
Data Mining for Automated Functional Representations
Last synced: 21 Jun 2026
https://github.com/deepskies/deeplenstronomy
A pipeline for versatile strong lens sample simulations
gravitational-lensing simulation strong-lensing
Last synced: 21 Jun 2026
https://github.com/scikit-hep/pyhf
pure-Python HistFactory implementation with tensors and autodiff
asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python scientific-computations scikit-hep scipy statistical-inference statistics
Last synced: 21 Jun 2026
https://github.com/PyAutoLabs/PyAutoFit
PyAutoFit: Classy Probabilistic Programming
astronomy bayesian-inference bayesian-methods graphical-models mcmc model probabilistic-programming python statistical-analysis statistics stats
Last synced: 21 Jun 2026
https://github.com/upb-lea/gym-electric-motor
Gym Electric Motor (GEM): An OpenAI Gym Environment for Electric Motors
benchmark converters electric-drive electrical-engineering gym-environment machinelearning motor-models openai openai-gym openai-gym-environments pmsm reinforcement-learning
Last synced: 21 Jun 2026
https://github.com/sciapp/sampledb
Sample and Measurement Metadata Database
Last synced: 21 Jun 2026
https://github.com/ivadomed/ivadomed
Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.
Last synced: 21 Jun 2026
https://github.com/PsrSigSim/PsrSigSim
The first version of our pulsar signal simulator.
Last synced: 21 Jun 2026
https://github.com/PyAutoLabs/PyAutoLens
PyAutoLens: Open-Source Strong Gravitational Lensing
astronomy astrophysics bayesian-inference cosmology galaxy gravitational-lensing python
Last synced: 21 Jun 2026
https://github.com/vahid-sb/MiTfAT
A Python-based Analysis Tool for Molecular fMRI Experiments.
computational-neuroscience fmri-analysis machine-learning python time-series-analysis
Last synced: 21 Jun 2026
https://github.com/dynamicslab/pysensors/
PySensors is a Python package for sparse sensor placement
optimization-tools sensor sensor-placement sensors
Last synced: 21 Jun 2026
https://github.com/JannisHoch/copro
(ML) model for computing conflict risk from climate, environmental, and societal drivers.
climate conflict environment projection risk security
Last synced: 21 Jun 2026
https://github.com/pyomeca/ezc3d
Easy to use C3D reader/writer for C++, Python and Matlab
Last synced: 21 Jun 2026
https://github.com/ClaudioZandonella/PRDA
R Package for Prospective and Retrospective Design Analysis
design-analysis r r-package statistics
Last synced: 21 Jun 2026
https://github.com/pencil-code/pencil-code
A high-order finite-difference code for compressible hydrodynamic flows with magnetic fields and particles
Last synced: 21 Jun 2026
https://github.com/jdber1/opendrop
OpenDrop pendant drop tensiometry software
Last synced: 21 Jun 2026
https://github.com/learningsimulator/learningsimulator
Learning Simulator: A simulation software for animal and human learning
associative-learning behavior gui mathematical-modelling python reinforcement-learning simulation
Last synced: 21 Jun 2026
https://github.com/NatLabRockies/OpenOA
This library provides a framework for assessing wind plant performance using operational assessment (OA) methodologies that consume time series data from wind plants. The goal of the project is to provide an open source implementation of common data structures, analysis methods, and utility functions relevant to wind plant OA.
Last synced: 21 Jun 2026
https://github.com/zemogle/astrosource/
Analyse time series of sources with variability in their brightness
Last synced: 21 Jun 2026
https://github.com/ghislainv/forestatrisk
📦🐍 Python package to model and forecast the risk of deforestation
biodiversity-scenario co2-emissions deforestation deforestation-risk forecasting forest-cover-change ipbes ipcc land-use-change protected-areas python redd roads spatial-analysis spatial-autocorrelation spatial-modelling tropical-forests
Last synced: 21 Jun 2026
https://github.com/pangeo-data/climpred
:earth_americas: Verification of weather and climate forecasts :earth_africa:
climate climate-analysis dask forecasting pangeo prediction python s2d s2s xarray
Last synced: 21 Jun 2026
https://github.com/montilab/nf-gwas-pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
bioinformatics-pipeline nextflow
Last synced: 21 Jun 2026
https://github.com/opengeos/lidar
A Python package for delineating nested surface depressions from digital elevation data.
digital-elevation-model gis hydrological image-processing lidar python remote-sensing terrain-analysis
Last synced: 21 Jun 2026
https://github.com/imr-framework/OCTOPUS
Off-resonance Correction OPen soUrce Software
Last synced: 21 Jun 2026
https://github.com/symmy596/Polypy
polypy - Analysis Tools for Solid State Molecular Dynamics and Monte Carlo Trajectories
chemistry materials-science molecular-dynamics-simulation monte-carlo-simulation simulation solid-state-chemistry solid-state-physics
Last synced: 21 Jun 2026
https://github.com/EpistasisLab/regens
Recombines real genomic segments to simulate whole genomes
gwas-tools simulated-datasets
Last synced: 21 Jun 2026
https://github.com/lydialucchesi/Vizumap
R package for visualizing uncertainty in spatial data
Last synced: 21 Jun 2026
https://github.com/VeinsOfTheEarth/RivGraph
Extracting and quantifying graphical representations of river and delta channel networks from binary masks
manuscript python
Last synced: 21 Jun 2026
https://github.com/wvanzeist/riroriro
A code for simulating gravitational waves and evaluating their detectability.
bpass gravitational-waves
Last synced: 22 Jun 2026
https://github.com/js2264/VplotR/
R package to easily generate "V-plots" of paired-end sequencing data over regions of interest
Last synced: 21 Jun 2026
https://github.com/jbuisine/macop
Minimalist And Customisable Optimisation python Package
algorithms evolutionary-algorithms generic optimisation python
Last synced: 21 Jun 2026
https://github.com/samaygarg/fuelcell
Electrochemical data analysis package
Last synced: 21 Jun 2026
https://github.com/kadyb/rgugik
Download datasets from Polish Head Office of Geodesy and Cartography
cartography geodesy gis open-data poland r
Last synced: 21 Jun 2026
https://github.com/fermisurfaces/IFermi
Fermi surface generation, analysis and visualisation.
fermi-slice fermi-surface vasp
Last synced: 21 Jun 2026
https://github.com/bempp/bempp-cl
A fast Python based just-in-time compiling boundary element library
Last synced: 21 Jun 2026
https://gitlab.inria.fr/mosaic/bvpy
Bvpy is a python library, based on FEniCS, Gmsh & Meshio, to easily implement and study numerically Boundary Value Problems and Initial Boundary Value Problems through the Finite Element Method.
A python library for (Initial) Boundary Value Problems exploration.
Last synced: 21 Jun 2026
https://github.com/Balaje/iceFem
Contains FreeFem source codes for modelling wave induced ice-shelf vibrations
fluid freefem fsi ice-shelf structure vibration
Last synced: 21 Jun 2026
https://github.com/JGCRI/ambrosia
An R package for calculating and analyzing food demand and in accordance with the Edmonds et al food demand model
economics food-security scientific-computing
Last synced: 22 Jun 2026
https://gitlab.com/emd-dev/emd
Empirical Mode Decomposition in Python <a href="https://gitlab.com/ajquinn/emd/commits/master"><img alt="pipeline status" src="https://gitlab.com/ajquinn/emd/badges/master/pipeline.svg" /></a>
Last synced: 21 Jun 2026
https://github.com/OpenMDAO/dymos
Open Source Optimization of Dynamic Multidisciplinary Systems
co-design nasa openmdao optimal-control pseudospectral trajectory-optimization
Last synced: 21 Jun 2026
https://github.com/prdm0/ropenblas
Package to link R language to OpenBLAS library
Last synced: 21 Jun 2026
https://github.com/JuliaSymbolics/Metatheory.jl
Makes Julia reason with equations. General purpose metaprogramming, symbolic computation and algebraic equational reasoning library for the Julia programming language: E-Graphs & equality saturation, term rewriting and more.
compiler-construction compiler-optimization egraphs equality-saturation julia optimization programming-language symbolic symbolic-computation symbolic-manipulation term-rewriting
Last synced: 21 Jun 2026
https://github.com/JohannesBuchner/UltraNest/
Fit and compare complex models reliably and rapidly. Advanced nested sampling.
model-selection monte-carlo nested-sampling parallel-computing python
Last synced: 21 Jun 2026
https://github.com/mponce0/covid19.analytics/
R package to obtain and analyze live data from the nCOVID19 coronavirus
covid19 covid19-data ncov2019 r sars-cov-2
Last synced: 21 Jun 2026
https://github.com/benmaier/epipack
Fast prototyping of infectious-disease models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
Last synced: 21 Jun 2026
https://github.com/JulienPeloton/s4cmb
Simulation of instrumental systematic effects in the context of CMB observations
cmb instrument simulation systematics
Last synced: 21 Jun 2026
https://git.rwth-aachen.de/ants/sensorlab/imea
imea: A Python package for extracting 2D and 3D shape measurements from images
Last synced: 22 Jun 2026
https://github.com/somefunAgba/NLSIG-COVID19Lab
A nlogistic-sigmoid playground for modelling the COVID-19 pandemic growth
covid-19 deaths epidemiology growth-process infections logistic-metrics logistic-regression machine-learning matlab neural-networks optimization peak yir
Last synced: 21 Jun 2026
https://github.com/PyFstat/PyFstat/
a python package for gravitational wave analysis with the F-statistic
astrophysics gravitational-waves gravity ligo neutron-star pycuda python3 virgo
Last synced: 21 Jun 2026
https://gitlab.com/energyincities/besos/
Core functionality of the BESOS platform (besos.uvic.ca), including building energy simulation via EnergyPlus, optimization via Platypus and surrogate-modelling via scikit-learn.
Last synced: 22 Jun 2026
https://github.com/vbaliga/gaussplotR
🔔 Fit, predict, and plot 2D Gaussians in R
2d-gaussian gaussian gaussian-fit gaussian-interpolation gaussian-plot gaussian-volume plotting r rstats
Last synced: 21 Jun 2026
https://github.com/polsartools/PolSARtools-QGIS
A QGIS plugin to generate polarimetric SAR descriptors.
polarimetric-decompositions polarimetric-sar-data qgis3-plugin radar-vegetation sar
Last synced: 21 Jun 2026
https://github.com/sisl/POMDPStressTesting.jl
Adaptive stress testing of black-box systems within POMDPs.jl
black-box pomdps simulation solvers stress-test
Last synced: 21 Jun 2026
https://github.com/nevrome/bleiglas
R Package - Spatiotemporal Data Interpolation and Visualisation based on 3D Tessellation
3d r tessellation voronoi
Last synced: 21 Jun 2026
https://github.com/gvilitechltd/LibSWIFFT
LibSWIFFT - A fast C/C++ library for the SWIFFT secure homomorphic hash function
c c-plus-plus c-plus-plus-11 cpp cpp11 cryptography hash-functions homomorphic lattice-based-crypto secure-hashing swifft
Last synced: 21 Jun 2026
https://github.com/Sbozzolo/kuibit/
Python 3 post-processing tools for simulations performed with the Einstein Toolkit
Last synced: 21 Jun 2026
https://github.com/dcr-unibe-ch/presize
Precision Based Sample Size Calculation
confidence-intervals precision sample-size-calculation shiny-app
Last synced: 21 Jun 2026
https://github.com/linksmart/thing-directory
Directory of Web of Things (WoT) Thing Descriptions. Maintained fork at https://github.com/TinyIoT/thing-directory
tdd thing-description thing-description-directory w3c web-of-things wot
Last synced: 21 Jun 2026
https://github.com/robashaw/libecpint
A C++ library for the efficient evaluation of integrals over effective core potentials.
Last synced: 21 Jun 2026
https://github.com/SNEWS2/sntools
Event generator for supernova burst neutrinos
Last synced: 21 Jun 2026
https://github.com/AstraZeneca/kallisto
Efficiently calculate 3D-features for quantitative structure-activity relationship approaches.
chemistry computational-chemistry machinelearning quantum-chemistry
Last synced: 21 Jun 2026
https://github.com/niosh-mining/obsplus
A Pandas-Centric ObsPy Expansion Pack
pandas seismology
Last synced: 21 Jun 2026
https://github.com/MathEXLab/PySPOD
A Python package for spectral proper orthogonal decomposition (SPOD).
coherent-structures data-mining dynamical-systems spod
Last synced: 21 Jun 2026
https://github.com/kuadrat/data-slicer
Multidimensional data visualization tools
python visualization
Last synced: 21 Jun 2026
https://github.com/lskatz/SneakerNet
:feet: QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run
Last synced: 21 Jun 2026
https://github.com/ropensci/stantargets
Reproducible Bayesian data analysis pipelines with targets and cmdstanr
bayesian high-performance-computing make r r-targetopia reproducibility rstats rstats-package stan statistics targets
Last synced: 21 Jun 2026
https://github.com/FourierFlows/GeophysicalFlows.jl
Geophysical fluid dynamics pseudospectral solvers with Julia and FourierFlows.jl.
baroclinic fourierflows geophysical-fluid-dynamics gpu julia navier-stokes pdes qg quasigeostrophy sqg
Last synced: 21 Jun 2026
https://github.com/dpalmasan/TRUNAJOD2.0
An easy-to-use library to extract indices from texts.
coherence cohesion entity-graph lexical-diversity natural-language-processing readability-metrics semantic-measurements spacy spacy-extensions text-analysis text-mining text-processing ttr type-token-ratio
Last synced: 21 Jun 2026
https://github.com/JuliaClimate/Drifters.jl
Trajectory simulations for point particles in the Ocean & Atmosphere
Last synced: 21 Jun 2026
https://github.com/sylvaticus/BetaML.jl
Beta Machine Learning Toolkit
ai artificial-intelligence autoencoder classification clustering data-science decision-trees deep-learning feature-importance imputation julia machine-learning ml neural-networks pca random-forest regression
Last synced: 21 Jun 2026
https://github.com/isoverse/isoreader
Read IRMS (Isotope Ratio Mass Spectrometry) data files into R
data ecology geochemistry isotopes r
Last synced: 21 Jun 2026
https://github.com/JohannesBuchner/BXA
Bayesian X-ray analysis (nested sampling for Xspec and Sherpa)
model-selection nested-sampling python sherpa spectroscopy x-ray-astronomy xspec
Last synced: 21 Jun 2026
https://github.com/niceume/datasailr
Base repository for DataSailr R package, which enables row by row data manipulation. To build and/or develop DataSailr R package, use datasailr_toolchain repository.
Last synced: 21 Jun 2026
https://github.com/3d-pli/fastpli
Fiber Architecture Simulation Toolbox for 3D Polarized Light Imaging
Last synced: 21 Jun 2026
https://github.com/spacetx/starfish
starfish: unified pipelines for image-based transcriptomics
human-cell-atlas imaging python transcriptomics
Last synced: 21 Jun 2026
https://github.com/csinva/imodels
Interpretable ML package 🔍 for concise, transparent, and accurate predictive modeling (sklearn-compatible).
ai artificial-intelligence bayesian-rule-list data-science explainable-ai explainable-ml imodels interpretability machine-learning ml optimal-classification-tree python rule-learning rulefit rules scikit-learn statistics supervised-learning
Last synced: 21 Jun 2026
