https://github.com/tlverse/hal9001
🤠 📿 The Highly Adaptive Lasso
cross-validation lasso-regression machine-learning-algorithms nonparametric-regression
Last synced: 22 Jun 2026
https://github.com/bblodfon/emba
Ensemble Model Biomarker Analysis R package
biomarkers ensemble-models r r-package
Last synced: 22 Jun 2026
https://github.com/bethgelab/foolbox
A Python toolbox to create adversarial examples that fool neural networks in PyTorch, TensorFlow, and JAX
adversarial-attacks adversarial-examples jax keras machine-learning python pytorch tensorflow
Last synced: 22 Jun 2026
https://github.com/htjb/maxsmooth
Constrained Derivative Function Optimisation
astrophysics maths optimisation optimisation-algorithms physics science
Last synced: 22 Jun 2026
https://github.com/czbiohub-sf/cerebra
A tool for fast and accurate summarizing of variant calling format (VCF) files
genomics mutations scrna-seq variant-calling
Last synced: 22 Jun 2026
https://github.com/wilsonrljr/sysidentpy
A Python Package For System Identification Using NARMAX Models
data-science dynamical-systems machine-learning narmax narx system-identification time-series
Last synced: 22 Jun 2026
https://github.com/jannikmi/multivar_horner
python package implementing a multivariate Horner scheme for efficiently evaluating multivariate polynomials
evaluation factorization horner horner-scheme hornerscheme-solver math mathematics multivariate multivariate-polynomials polynomial polynomial-evaluation polynomials python python3
Last synced: 22 Jun 2026
https://github.com/s-goldman/Dusty-Evolved-Star-Kit
SED-fitting python package for fitting evolved stars
Last synced: 22 Jun 2026
https://github.com/brainglobe/brainglobe-atlasapi
A Python interface to access neuroanatomical atlases
atlases brain microscopy neuroscience python registration visualisation
Last synced: 22 Jun 2026
https://github.com/upb-lea/openmodelica-microgrid-gym
OpenModelica Microgrid Gym (OMG): An OpenAI Gym Environment for Microgrids
control electrical-engineering energy-system-modeling engineering machine-learning microgrid modelica openai-gym openai-gym-environments openmodelica power-electronics power-supply power-systems python reinforcement-learning simulation smart-grids
Last synced: 22 Jun 2026
https://github.com/nhejazi/txshift
:package: R/txshift: Efficient Estimation of the Causal Effects of Stochastic Interventions, with Corrections for Outcome-Dependent Sampling
causal-effects causal-inference censored-data machine-learning robust-statistics statistics stochastic-interventions stochastic-treatment-regimes targeted-learning treatment-effects variable-importance
Last synced: 22 Jun 2026
https://github.com/ropensci/medrxivr
Access and search medRxiv and bioRxiv preprint data
bibliographic-database biorxiv evidence-synthesis medrxiv-data peer-reviewed preprint-records r r-package rstats systematic-reviews
Last synced: 22 Jun 2026
https://github.com/tbrown122387/pf
PF: a header only template library for fast particle filtering!
particle-filter statistical-methods statistical-models statistics
Last synced: 22 Jun 2026
https://github.com/andyphilips/dynamac
Dynamic simulation and testing for single-equation ARDL models, available for both R and Stata
ardl r stata time-series time-series-analysis
Last synced: 22 Jun 2026
https://github.com/NCAS-CMS/cfdm
A Python reference implementation of the CF data model
aggregation atmosphere cf climate dask data data-compression forecasting metadata netcdf ocean python ugrid zarr
Last synced: 22 Jun 2026
https://github.com/morphometry/papaya2
compute 2D irreducible Minkowski tensors
Last synced: 22 Jun 2026
https://github.com/ramadatta/CPgeneProfiler
CPgeneProfiler R package repository
assembly-size carbapenamase-genes cocarriage cp-gene genome-assemblies ncbi-blast
Last synced: 22 Jun 2026
https://github.com/pymatting/pymatting
A Python library for alpha matting
alpha-matting foreground image-processing python3
Last synced: 22 Jun 2026
https://github.com/mortonne/psifr
Psifr: Analysis and visualization of free recall data
episodic-memory psychology python visualization
Last synced: 22 Jun 2026
https://github.com/labsyspharm/minerva-story
Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
immunofluorescence microscopy minerva ome
Last synced: 22 Jun 2026
https://github.com/jboynyc/textnets
Text analysis with networks.
computational-social-science network-analysis nlp sociology text-analysis text-as-data visualization
Last synced: 22 Jun 2026
https://github.com/nicolet5/DiffCapAnalyzer
A tool for quantitative analysis of differential capacity data!
Last synced: 22 Jun 2026
https://github.com/mtsch/Ripserer.jl
Flexible and efficient persistent homology computation.
cohomology homology julia persistent-homology ripser tda topological-data-analysis topology
Last synced: 22 Jun 2026
https://github.com/Nico-Curti/rFBP
Replicated Focusing Belief Propagation algorithm
belief-propagation cpp17 deep-neural-networks learning-algorithm machine-learning-algorithms python3 spin-glass statistical-mechanics
Last synced: 22 Jun 2026
https://github.com/21cmFAST/21cmFAST
Official repository for 21cmFAST: a code for generating fast simulations of the cosmological 21cm signal
Last synced: 22 Jun 2026
https://github.com/dstansby/pfsspy
Potential Field Source Surface model package for Python
physics python solar-physics sun
Last synced: 22 Jun 2026
https://github.com/amrex-astro/Castro
Castro (Compressible Astrophysics): An adaptive mesh, astrophysical compressible (radiation-, magneto-) hydrodynamics simulation code for massively parallel CPU and GPU architectures.
adaptive-mesh-refinement amr amrex astrophysical-simulation astrophysics castro cfd gravity hydrodynamics pde radiation reactions
Last synced: 22 Jun 2026
https://github.com/mdolab/pyoptsparse/
pyOptSparse is an object-oriented framework for formulating and solving nonlinear constrained optimization problems in an efficient, reusable, and portable manner.
Last synced: 22 Jun 2026
https://github.com/passaH2O/dorado
For shallow-water Lagrangian particle routing.
hydrodynamic-modeling lagrangian numerical-modeling numerical-modelling particle particle-routing particle-tracing particle-tracking particle-transport particles passive-tracers random-walk rivers simulator tracer
Last synced: 22 Jun 2026
https://github.com/alexrockhill/pd-parser
A tool to parse photodiode events from a possibly corrupted channel, compatible with BIDS formatting
Last synced: 22 Jun 2026
https://github.com/AngryMaciek/angry-moran-simulator
A general game-theoretical framework to carry out scientific simulations of populations' evolution according to the Moran model 🧮
evolutionary-game-theory moran-process population-genetics python python-package
Last synced: 22 Jun 2026
https://github.com/3d-pli/SLIX
Scattered Light Imaging ToolboX (SLIX) – an open-source Python package that allows a fully automated evaluation of SLI measurements and the generation of different parameter maps
Last synced: 22 Jun 2026
https://github.com/sp94/Peacock.jl
Photonic crystals in Julia 🦚
electromagnetic-simulation electromagnetics electromagnetism maxwell-equations maxwell-equations-solver photonic-crystals photonics physics plane-wave-expansion
Last synced: 22 Jun 2026
https://github.com/xillig/TTLocVis
TTLocVis: Twitter Topic Location Visualization
Last synced: 22 Jun 2026
https://github.com/ml-evs/matador
⚗️ matador is an aggregator, manipulator and runner of first-principles calculations, written with a bent towards battery 🔋 electrode materials.
computational-chemistry materials-science python
Last synced: 22 Jun 2026
https://github.com/WelbornGroup/ELECTRIC
ELECTRIC: Electric fields Leveraged from multipole Expansion Calculations in Tinker Rapid Interface Code.
Last synced: 22 Jun 2026
https://github.com/JanCBrammer/biopeaks
A graphical user interface for feature extraction from heart- and breathing biosignals.
biosignals bitalino breathing breathing-rate ecg edf electrophysiology gui heart heart-rate opensignals peak-detection ppg python signal-analysis
Last synced: 22 Jun 2026
https://github.com/tylunel/pvpumpingsystem
Provides tools for modeling photovoltaic water pumping system
Last synced: 22 Jun 2026
https://github.com/kgoldfeld/simstudy/
simstudy: Illuminating research methods through data generation
data-generation data-simulation r simulation statistical-models
Last synced: 22 Jun 2026
https://github.com/spectralcode/OCTproZ
OCTproZ is an open source software for optical coherence tomography processing and visualization.
cuda dsp gpu-processing medical-image-processing mhz-oct nvidia-jetson-nano oct optical-coherence-tomography optics qt visualization
Last synced: 23 Jun 2026
https://github.com/JuliaDynamics/DrWatson.jl
The perfect sidekick to your scientific inquiries
hacktoberfest project-assistant project-management science science-research setup-tool simulations
Last synced: 22 Jun 2026
https://github.com/VincentAlcazer/StatAid
StatAid is a Shiny app built in an R package to guide researchers and clinicians through data analysis
data-analysis life-sciences r statistics
Last synced: 23 Jun 2026
https://github.com/ketch/RK-Opt
A package for the design of numerical ODE solvers
Last synced: 22 Jun 2026
https://github.com/lnferris/ocean_data_tools
A MATLAB toolbox for interacting with bulk freely-available oceanographic data.
argo-floats hycom matlab ocean ocean-data oceanography physical-oceanography
Last synced: 22 Jun 2026
https://github.com/neuroanatomy/reorient
A tool for reorienting and cropping MRI data
hacktoberfest
Last synced: 22 Jun 2026
https://github.com/DeepRegNet/DeepReg
Medical image registration using deep learning
convolutional-neural-networks deep-learning deep-neural-networks deepreg image-fusion image-registration medical-image-registration neural-network tensorflow2
Last synced: 22 Jun 2026
https://github.com/syasini/AstroPaint
A python package for creating mock maps of astrophysical signals from a halo catalog
astrophysical-signals cosmology halo-catalog python simulation-toolkit
Last synced: 22 Jun 2026
https://github.com/JuliaAI/MLJ.jl
A Julia machine learning framework
classification clustering data-science ensemble-learning julia machine-learning pipeline pipelines predictive-modeling regression stacking statistics tuning tuning-parameters
Last synced: 22 Jun 2026
https://github.com/romain-montagne/vrpy
A python framework for solving the VRP and its variants with column generation.
coinor column-generation cspy cvrp networkx optimization pulp python vrp vrptw
Last synced: 22 Jun 2026
https://github.com/Yomguithereal/talisman
Straightforward fuzzy matching, information retrieval and NLP building blocks for JavaScript.
clustering deduplication fuzzy-matching information-retrieval machine-learning natural-language-processing record-linkage
Last synced: 22 Jun 2026
https://github.com/gesistsa/oolong
🍵 Create and administrate validation tests for automated content analysis tools.
r textanalysis topicmodeling validation
Last synced: 22 Jun 2026
https://github.com/xoopR/set6
R6 object-oriented interface for mathematical sets.
intervals oop r r6 sets
Last synced: 22 Jun 2026
https://gitlab.gwdg.de/mpievolbio-it/crbhits
[CRBHits](https://gitlab.gwdg.de/mpievolbio-it/crbhits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
Last synced: 22 Jun 2026
https://github.com/thepetabyteproject/your
Your Unified Reader
fast-radio-bursts filterbank psrdada psrdada-python psrfits pulsars python
Last synced: 22 Jun 2026
https://github.com/bihealth/sodar-core-legacy
LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.
Last synced: 22 Jun 2026
https://gitlab.com/LMSAL_HUB/aia_hub/aiapy
Moved to: https://github.com/LM-SAL/aiapy Please open issues or pull requests there
Last synced: 22 Jun 2026
https://github.com/KarrLab/de_sim
Python-based object-oriented discrete-event simulation tool for complex, data-driven modeling
computational-modelling data-driven-model discrete-event-simulation object-oriented-programming python simulation
Last synced: 23 Jun 2026
https://github.com/KathrynJones1/catwoman
A transit modelling Python package for asymmetric light curves
Last synced: 22 Jun 2026
https://github.com/V69dxz/dearscholar
DearScholar: An open-source smartphone app for longitudinal scientific qualitative and quantitative (self-report) diary, log and survey research
Last synced: 22 Jun 2026
https://gitlab.com/geekysquirrel/bigx
A data visualisation tool for geographic datasets
Last synced: 22 Jun 2026
https://github.com/SwissClinicalTrialOrganisation/secuTrialR
Handling of data from the clinical data management system secuTrial
Last synced: 22 Jun 2026
https://github.com/alan-turing-institute/monitoring-ecosystem-resilience
Repository for mini-projects in the Data science for Sustainable development project
hut23 hut23-240
Last synced: 22 Jun 2026
https://github.com/equib/pyEQUIB
pyEQUIB - Python Package for Plasma Diagnostics and Abundance Analysis
atomic-level-populations chemical-elements line-emissivities pyequib python statistical-equilibrium
Last synced: 22 Jun 2026
https://github.com/atomneb/AtomNeb-py
AtomNeb - Python Package for Atomic Data of Ionized Nebulae
atomic-datasets atomneb chianti-atomic-database collisionally-excited-lines recombination-coefficients recombination-lines
Last synced: 22 Jun 2026
https://github.com/hemanthpruthvi/PyAstroPol
Instrumental Polarization Analysis of Astronomical Optics
Last synced: 22 Jun 2026
https://github.com/asmusskar/ALVA
ALVA is a MATLAB-package for advanced pavement modeling that is highly adaptive
Last synced: 22 Jun 2026
https://github.com/amanchokshi/EMBERS
Experimental Measurement of BEam Responses with Satellites
murchison-widefield-array radio-astronomy satellites telescope
Last synced: 22 Jun 2026
https://github.com/BioSTEAMDevelopmentGroup/thermosteam
BioSTEAM's Premier Thermodynamic Engine
chemical chemical-engineering equations-of-state liquid-liquid-equilibrium material-and-energy-balance mixture properties reaction thermodynamics vapor-liquid-equilibrium
Last synced: 22 Jun 2026
https://gitlab.com/vibes-developers/vibes
[FHI-vibes](https://vibes-developers.gitlab.io/vibes/): Vibrational simulations with python powered by ASE and FHI-aims.
Last synced: 22 Jun 2026
https://gitlab.inria.fr/bramas/tbfmm
Lightweight task-based FMM using the block tree and OpenMP/StarPU/Specx. Vectorized with Inastemp. Works with multiple CUDA GPUs.
Last synced: 22 Jun 2026
https://github.com/MAnalytics/akmedoids
akmedoids for longitudinal clustering
Last synced: 22 Jun 2026
https://github.com/lrnv/cort
Classes and Tools For Some Empirical and Non-parametrical Copula Models.
Last synced: 22 Jun 2026
https://github.com/rcarragh/c212
Methods for detecting safety signals in clinical trials using groupings of adverse events by body-system or system organ class.
Last synced: 22 Jun 2026
https://github.com/circuitgraph/circuitgraph
Tools for working with circuits as graphs in python
boolean-circuits eda graphs netlist python satisfiability
Last synced: 22 Jun 2026
https://github.com/JGCRI/hectorui/
A web-based interactive scenario builder and visualization application for the Hector climate model
Last synced: 22 Jun 2026
https://github.com/BioGearsEngine/core
Repository for libbiogears and all core utilities
Last synced: 22 Jun 2026
https://github.com/Geodels/gospl/
Global Scalable Paleo Landscape Evolution Model
basin-modeling compaction erosion-process landscape landscape-evolution-model lithology paleoclimate paleogeography sediment-transport sedimentation
Last synced: 23 Jun 2026
https://github.com/fruzsinaagocs/oscode
Code for efficient solution of oscillatory ordinary differential equations
differential-equations numerical-methods numpy oscillator runge-kutta wentzel-kramers-brillouin
Last synced: 22 Jun 2026
https://github.com/pypeit/PypeIt
The Python Spectroscopic Data Reduction Pipeline
Last synced: 22 Jun 2026
https://github.com/JuliaHCI/ADI.jl
Algorithms for performing angular differential imaging (ADI)
adi astronomy hci imaging reduction
Last synced: 23 Jun 2026
https://github.com/ropensci/coder
Classification of Cases into Deterministic Categories
classification icd-10 package r r-package rstats
Last synced: 22 Jun 2026
https://github.com/ropensci/SymbiotaR2
SymbiotaR2: an R package for accessing and downloading from Symbiota2 portals
database library r specimen-records symbiota symbiota2 symbiota2-portal
Last synced: 22 Jun 2026
https://github.com/alan-turing-institute/DetectorChecker
Project to develop software to assess developing detector screen damage (Web App based on the original DetectorChecker package)
hut23 hut23-122
Last synced: 22 Jun 2026
https://github.com/Climdyn/qgs
A 2-layer quasi-geostrophic atmospheric model in Python. Can be coupled to a simple land or shallow-water ocean component.
atmospheric-models climate climate-variability meteorology numba ocean-atmosphere-model python
Last synced: 22 Jun 2026
https://github.com/benjaminbolling/DynaGUI
A Dynamic Graphical User Interface package, which gives users a method to construct temporary, permanent and/or a set of GUI:s for users in a simple and fast manner combined with diagnostics tools (with advance 1D and 2D plotting methods).
Last synced: 22 Jun 2026
https://github.com/WebFuzzing/EvoMaster
The first open-source AI-driven tool for automatically generating system-level test cases (also known as fuzzing) for web/enterprise applications. Currently targeting whitebox and blackbox testing of Web APIs, like REST, GraphQL and RPC (e.g., gRPC and Thrift).
api-rest api-testing evolutionary-algorithms fuzzer fuzzing graphql grpc java kotlin rest rpc-api search-based-software-testing test-case-generation testing thrift
Last synced: 23 Jun 2026
https://github.com/jbytecode/LinRegOutliers
Direct and robust methods for outlier detection in linear regression
linear-regression outliers-detection robust-statistics
Last synced: 22 Jun 2026
https://github.com/ropensci/rdataretriever
R interface to the Data Retriever
data data-science database datasets r r-package rstats science
Last synced: 22 Jun 2026
https://github.com/nextstrain/augur/
Pipeline components for real-time phylodynamic analysis
Last synced: 22 Jun 2026
https://gitlab.com/gims-developers/gims
GIMS -- Graphical Interface for Materials Simulations -- is an open-source, browser-based toolbox for electronic structure codes. Try it here: [gims.ms1p.org](https://gims.ms1p.org)
Last synced: 22 Jun 2026
