Ecosyste.ms: Summary

https://github.com/corybrunson/ggalluvial

ggplot2 extension for alluvial plots

alluvial-diagrams alluvial-plots categorical-data-visualization ggplot2 r repeated-measures-data

Last synced: 22 Jun 2026

https://github.com/torressa/cspy

A collection of algorithms for the (Resource) Constrained Shortest Path problem in Python / C++ / C#

bidirectional-labeling-algorithm csp-problem operations-research optimization optimization-algorithms optimization-library resource-constrained-shortest-path

Last synced: 22 Jun 2026

https://github.com/oemof/tespy

Thermal Engineering Systems in Python (TESPy). This package provides a powerful simulation toolkit for thermodynamic modeling of thermal engineering plants such as power plants, heat pumps or refrigeration machines.

cooling energy-system exergy heating powerplant process-engineering python refrigeration simulation thermodynamic-cycles thermodynamics

Last synced: 22 Jun 2026

https://github.com/DeepRank/pdb2sql

Fast and versatile biomolecular structure PDB file parser using SQL queries

Last synced: 22 Jun 2026

https://github.com/joaomcteixeira/taurenmd

A command-line interface for analysis of Molecular Dynamics simulations.

Last synced: 22 Jun 2026

https://github.com/arm61/uravu

A straightforward Bayesian data fitting library

bayesian-inference bayesian-statistics data-analysis fitting markov-chain-monte-carlo nested-sampling

Last synced: 22 Jun 2026

https://github.com/samuelduchesne/archetypal

archetypal: Retrieve, construct, simulate, convert and analyse building simulation templates

archetypes buildings energy-simulation energyplus energyplus-models python simulation-templates umi umi-template visualization

Last synced: 22 Jun 2026

https://github.com/MariaTsantaki/FASMA-synthesis

Python code for stellar spectral analysis

Last synced: 22 Jun 2026

https://github.com/gap-packages/RepnDecomp

Decompose representations of finite groups into irreducibles

group-theory representation-theory

Last synced: 22 Jun 2026

https://github.com/teb-model/teb

🏘️ The Town Energy Balance (TEB) model software and platform

atmospheric-modelling building-energy cmake energy-balance-model energy-consumption energy-model energy-simulation environmental-modelling forecasting-model land-surface-model meteorology teb town-energy-balance urban-energy-budget urban-meteorology urban-planning

Last synced: 22 Jun 2026

https://github.com/deniederhut/niacin

Enrich your data

Last synced: 22 Jun 2026

https://github.com/NatLabRockies/bifacial_radiance

Toolkit for working with RADIANCE for the ray-trace modeling of Bifacial Photovoltaics

bifacial gui photovoltaics radiance renewable-energy renewables

Last synced: 22 Jun 2026

https://github.com/anmolter/XLUR

A Python toolbox for ArcGIS Pro that enables the development and application of land use regression models.

arcgis lur python-toolbox

Last synced: 22 Jun 2026

https://github.com/KVSlab/turtleFSI

Monolithic Fluid-Structure Interaction (FSI) solver

fenics fluid-structure-interaction python

Last synced: 22 Jun 2026

https://github.com/mzy2240/ESA

Easy SimAuto (ESA): An easy-to-use Power System Analysis Automation Environment atop PowerWorld Simulator Automation Server (SimAuto)

automation contingency-analysis esa graph-analysis hpc numba numpy pandas power-flow powersystem powerworld powerworld-simulator python pythran simauto simulator simulator-automation-server smart-grid transient-stability

Last synced: 22 Jun 2026

https://github.com/drostlab/LTRpred

De novo annotation of young retrotransposons

diversification evolution genome ltr ltr-retrotransposons ltr-transposons pipeline

Last synced: 22 Jun 2026

https://github.com/coljac/sensie

Toolset for probing the sensitivity of a deep neural network model to various properties of the data.

Last synced: 22 Jun 2026

https://github.com/rgmyr/corebreakout

Segmentation and depth-alignment of geological core sample image columns via Mask-RCNN

Last synced: 22 Jun 2026

https://github.com/BartoszBartmanski/StoSpa2

A C++ software package for stochastic simulations of spatially extended systems

Last synced: 22 Jun 2026

https://github.com/Alcampopiano/hypothesize

Robust statistics in Python

confidence-intervals data-analysis hypothesis-testing null-hypothesis python r robust-statistics significance-testing statistics stats

Last synced: 22 Jun 2026

https://github.com/samhforbes/PupillometryR

An R package for preparing and analysing pupillometry data

Last synced: 22 Jun 2026

https://github.com/LiberTEM/LiberTEM

Open pixelated STEM framework

data-processing electron-microscopy image-processing python

Last synced: 22 Jun 2026

https://github.com/sam-greenwood/taco_vis

Python package for visualising torsional oscillations

Last synced: 22 Jun 2026

https://github.com/grf-labs/policytree

Policy learning via doubly robust empirical welfare maximization over trees

causal-inference policy-learning

Last synced: 22 Jun 2026

https://github.com/deezer/spleeter

Deezer source separation library including pretrained models.

audio-processing bass deep-learning deezer drums model pretrained-models python tensorflow vocals

Last synced: 22 Jun 2026

https://github.com/martibosch/detectree

Tree detection from aerial imagery in Python

image-segmentation python remote-sensing tree-canopy tree-detection tree-pixels

Last synced: 22 Jun 2026

https://github.com/meenakshi-kushwaha/mmaqshiny

R-Shiny package to explore Air-Pollution Mobile Monitoring data

Last synced: 22 Jun 2026

https://github.com/rajeshrinet/pystokes

PyStokes: phoresis and Stokesian hydrodynamics in Python. github.com/rajeshrinet/pystokes

active-colloids active-particles autophoretic-suspensions colloids crystallization cython force-fields hydrodynamic-interactions phase-separation phoretic-interactions pystokes python stokes-flow stokesian-hydrodynamics traction

Last synced: 22 Jun 2026

https://github.com/sap218/jabberwocky

NLP toolkit for those nonsensical ontologies

annotation grep jabberwocky metadata ontology plotting python synonyms text-mining textual-data tfidf

Last synced: 22 Jun 2026

https://github.com/lab-cosmo/chemiscope

An interactive structure/property explorer for materials and molecules

hacktoberfest materials-science molecule visualization web

Last synced: 22 Jun 2026

https://github.com/drwaseemsheikh/audiometry

Audiometry is an application framework written in C# and based on WPF and .NET that enables accurate digital recording, search, analysis, graphical visualization, and reproduction of human audio-vestibular impairment test data to assist in hearing loss or disability diagnosis.

audiometry csharp hearing-tests visualizing-data wpf

Last synced: 22 Jun 2026

https://github.com/ropensci/chirps

API Client for CHIRPS

chirps climatology precipitation-data rstats

Last synced: 22 Jun 2026

https://github.com/ihrke/pypillometry

Pupillometry and eyetracking with python

data data-analysis eye-tracking eyetracking pupillometry

Last synced: 22 Jun 2026

https://github.com/klho/FLAM

Fast linear algebra in MATLAB

Last synced: 22 Jun 2026

https://github.com/hrwakeford/ExoTiC-ISM

This is a repository for the reduction pipeline detailed in Wakeford, et al., 2016, ApJ. The method implements marginalization across a series of models to represent stochastic models for observatory and instrument systematics. This is primarily for HST WFC3, however, may be extended to STIS in the future.

Last synced: 22 Jun 2026

https://github.com/vsoch/gridtest

grid parameters and testing for Python modules and functions

gridtest testing yaml

Last synced: 22 Jun 2026

https://github.com/cmstatr/cmstatr

An R Package for Statistical Analysis of Composite Material Data

composite-material-data cran data materials-science r statistical-analysis statistics

Last synced: 22 Jun 2026

https://github.com/edwardoughton/itmlogic

Longley-Rice Irregular Terrain Model (itmlogic)

Last synced: 22 Jun 2026

https://github.com/TomKellyGenetics/graphsim

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

benchmarking gene-expression gene-regulatory-networks genetics genomic-data-analysis genomics graph-algorithms igraph-networks joss ngs-analysis package r-stats simulated-data simulation-modeling

Last synced: 22 Jun 2026

https://github.com/snowformatics/macrobot

Macrobot is an open source image analysis software for studying plant-pathogen interactions on macroscopic level.

computer-vision image-analysis plant-pathogen-interactions python

Last synced: 22 Jun 2026

https://github.com/danhey/maelstrom

Forward modelling of pulsating stars in binaries

asteroseismology astronomy astrophysics bayesian-inference binaries mcmc pymc3

Last synced: 22 Jun 2026

https://github.com/BrianAronson/birankr

CRAN package for estimating various rank (centrality) measures of nodes in bipartite graphs (two-mode networks).

Last synced: 22 Jun 2026

https://github.com/covid19datahub/COVID19/

A worldwide epidemiological database for COVID-19 at fine-grained spatial resolution

2019-ncov coronavirus covid-19 covid-data covid19-data r

Last synced: 22 Jun 2026

https://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/

Software for Practical Analysis of Materials

Last synced: 22 Jun 2026

https://gitlab.com/datafold-dev/datafold/

Python software for identifying dynamical systems and hidden patterns from time series data

Manifold Learning data-driven diffusion maps dynamic mode decomposition dynamical system koopman operator machine learning time series

Last synced: 22 Jun 2026

https://github.com/gee-community/geemap

A Python package for interactive geospatial analysis and visualization with Google Earth Engine.

colab data-science dataviz earth-engine earthengine folium geospatial gis google-earth-engine image-processing ipyleaflet ipywidgets jupyter jupyter-notebook landsat mapping python remote-sensing streamlit streamlit-webapp

Last synced: 23 Jun 2026

https://github.com/humanfactors/FIPS

The Fatigue Impairment Prediction Suite. An R package for running biomathematical models of fatigue.

biomathematics fatigue human-factors modeling r rstats simulation

Last synced: 22 Jun 2026

https://github.com/JonasRieger/ldaPrototype

Determine a Prototype from a number of runs of Latent Dirichlet Allocation.

latent-dirichlet-allocation lda model-selection modelselection reliability text-mining textdata topic-model topic-models topic-similarities topicmodeling topicmodelling

Last synced: 22 Jun 2026

https://github.com/darioizzo/dcgp

Implementation of a differentiable CGP (Cartesian Genetic Programming)

Last synced: 22 Jun 2026

https://github.com/r-spatial/rgee

Google Earth Engine for R

earth-engine earthengine google-earth-engine googleearthengine r spatial-analysis spatial-data

Last synced: 22 Jun 2026

https://github.com/rgerum/pylustrator

Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code.

code-generation gui interactive matplotlib visualisation

Last synced: 22 Jun 2026

https://github.com/donaldRwilliams/BGGM

Bayesian Gaussian Graphical Models

bayes-factors bayesian-hypothesis-testing gaussian-graphical-models

Last synced: 22 Jun 2026

https://github.com/csdms/bmi

The Basic Model Interface is a set of functions for coupling models to models and models to data

bmi c csdms cxx fortran geosciences interface java javascript julia numerical-modeling python

Last synced: 22 Jun 2026

https://github.com/rhenanbartels/hrv

A Python package for heart rate variability analysis

data-science hacktoberfest hrv python signal-processing

Last synced: 22 Jun 2026

https://github.com/keurfonluu/toughio

Pre- and post-processing Python library for TOUGH

io postprocessing preprocessing tough2 tough3

Last synced: 22 Jun 2026

https://github.com/zdelrosario/py_grama

Implementation of a grammar of model analysis

uq

Last synced: 23 Jun 2026

https://github.com/logological/gpp

GPP, a generic preprocessor

Last synced: 22 Jun 2026

https://github.com/ur-whitelab/hoomd-tf/

A plugin that allows the use of Tensorflow in Hoomd-Blue for GPU-accelerated ML+MD

machine-learning molecular-dynamics tensorflow

Last synced: 22 Jun 2026

https://github.com/adbar/htmldate

Fast and robust date extraction from web pages, with Python or on the command-line

date date-parser datetime digital-forensics entity-extraction forensics-tools information-extraction metadata metadata-extraction natural-language-processing nlp opengraph web-scraping webscraping

Last synced: 23 Jun 2026

https://github.com/swiftsim/swiftsimio

Python library for reading SWIFT data. Uses unyt and h5py.

astrophysics cosmology hdf5 particle simulation sph

Last synced: 22 Jun 2026

https://github.com/berenslab/MorphoPy

A Python package for feature extraction of neural morphologies

Last synced: 22 Jun 2026

https://github.com/stemangiola/tidyHeatmap

Draw heatmap simply using a tidy data frame

brewer complexheatmap custom-palette dplyr graphviz heatmap mtcars plotting r rstudio scale tibble tidy tidy-data-frame tidybulk tidyverse viridis

Last synced: 22 Jun 2026

https://github.com/aiidateam/kiwipy

A python messaging library for RPC, task queues and broadcasts

python rabbitmq

Last synced: 22 Jun 2026

https://github.com/ECSHackWeek/impedance.py

A Python package for working with electrochemical impedance data

battery corrosion electrochemistry fuel-cell impedance lithium-ion

Last synced: 22 Jun 2026

https://github.com/pyswmm/pyswmm

Python Wrappers for SWMM

hydraulic-modeling hydrology-stormwater-analysis python stormwater swmm swmm5

Last synced: 22 Jun 2026

https://github.com/ynop/audiomate

Python library for handling audio datasets.

audio audio-datasets corpus-tools data-loader dataset-creation dataset-filtering dataset-manager music noise speech speech-recognition

Last synced: 23 Jun 2026

https://github.com/NicolasHug/Surprise

A Python scikit for building and analyzing recommender systems

factorization machine-learning matrix recommendation recommender svd systems

Last synced: 22 Jun 2026

https://github.com/afeinstein20/stella

For characterizing flares with convolutional neural networks

Last synced: 22 Jun 2026

https://github.com/sambit-giri/tools21cm

21-cm-cosmology 21-cm-powerspectrum cosmic-dawn epoch-of-reionization reionization

Last synced: 22 Jun 2026

https://github.com/cicirello/Chips-n-Salsa

A Java library of Customizable, Hybridizable, Iterative, Parallel, Stochastic, and Self-Adaptive Local Search Algorithms

adaptive discrete-optimization evolutionary-computation genetic-algorithm hbss hill-climbing java local-search metaheuristics multithreading mutation optimization parallel-computing permutations randomized-heuristics scheduling search-algorithm simulated-annealing stochastic-sampling vbss

Last synced: 22 Jun 2026

https://github.com/dms-view/dms-view.github.io

Interactive visualization of mutational antigenic profiling data

Last synced: 22 Jun 2026

https://github.com/Sulstice/cocktail-shaker

A peptide string building for expanding chemical dataset combinations.

Last synced: 22 Jun 2026

https://github.com/hope-data-science/tidyfst

Tidy Verbs for Fast Data Manipulation

Last synced: 22 Jun 2026

https://github.com/cadop/seg1d

Automated segmentation of one-dimensional (1D) data

clustering motion-capture python segmentation time-series-analysis

Last synced: 22 Jun 2026

https://github.com/pfizer-opensource/sit2standpy

Python based module framework for detecting sit-to-stand transitions

Last synced: 22 Jun 2026

https://github.com/kinnala/scikit-fem

Simple finite element assemblers

fem pde python

Last synced: 22 Jun 2026

https://github.com/akcochrane/TEfits

R package for streamlined nonlinear regression

Last synced: 22 Jun 2026

https://github.com/DorianDepriester/mtex2Gmsh

Matlab toolbox for generating 2D meshes from EBSD data

crystal-plasticity ebsd fem mesh numerical-simulations polycrystal

Last synced: 22 Jun 2026

https://gitlab.com/utopia-project/dantro

dantro is a python package for handling, transforming, and visualizing hierarchically organized data. Integrated into data-intensive projects, it supplies an easy way to define a customizable, configuration-based data processing pipeline. See [utopya](https://gitlab.com/utopia-project/utopya) for an example.

data processing pipeline h5py matplotlib numpy python utopia-project xarray yaml

Last synced: 22 Jun 2026

https://gitlab.dune-project.org/dorie/dorie

Solver for the Richards Equation and passive solute transport. NOTE: This repository was recently migrated. Beware of dead links!

Last synced: 22 Jun 2026

https://github.com/sjvrijn/mf2

Collection of Multi-Fidelity benchmark functions

benchmark-functions benchmark-suite benchmarking-suite multi-fidelity python

Last synced: 22 Jun 2026

https://github.com/gridap/Gridap.jl

Grid-based approximation of partial differential equations in Julia

finite-elements gridap julia numerical-methods partial-differential-equations pdes

Last synced: 22 Jun 2026

https://github.com/kerkelae/disimpy

Massively parallel Monte Carlo diffusion MR simulator written in Python.

cuda diffusion-mri gpu-computing monte-carlo-simulation

Last synced: 22 Jun 2026

https://github.com/biboyd/SALSA

Salsa is a Python package for constructing synthetic absorber catalogs from astrophysical hydrodynamic simulations

Last synced: 22 Jun 2026

https://github.com/ghersi-lab/neep

A tool to perform high-throughput survival analysis on splice variants

Last synced: 22 Jun 2026

https://github.com/YoungFaithful/CapacityExpansion.jl

Capacity Expansion Problem Formulation for Julia

california capacity-expansion-planning clustering energy energy-optimization-model germany julia jump

Last synced: 22 Jun 2026

https://github.com/ginkgo-project/ginkgo

Numerical linear algebra software package

cuda dpcpp gpu-computing hip hpc krylov-methods linear-algebra oneapi openmp preconditioning sparse-linear-systems spmv

Last synced: 23 Jun 2026

https://github.com/matchms/matchms

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

analysis fuzzy-matching fuzzy-search mass-spectrometry metabolomics python3 similarity-measures

Last synced: 23 Jun 2026

https://github.com/LightForm-group/xrdfit

Fitting of peaks from SXRD experiment for single and dual-phase Zr and Ti alloys.

Last synced: 22 Jun 2026

https://github.com/ronikobrosly/causal-curve

A python package with tools to perform causal inference using observational data when the treatment of interest is continuous.

Last synced: 23 Jun 2026

https://gitlab.com/davidtourigny/dynamic-fba

dFBA dynamic FBA dynamic flux-balance analysis

Last synced: 23 Jun 2026

https://github.com/euroargodev/argopy

A python library for Argo data beginners and experts

argo argo-data argo-floats oceanography python

Last synced: 22 Jun 2026

https://gitlab.com/utopia-project/utopia

Utopia is a comprehensive modelling framework for complex adaptive systems.

C++ complex systems complex-adaptive-systems hdf5 modelling python simulation simulation-framework utopia-project

Last synced: 22 Jun 2026

https://github.com/qMRLab/qMRLab

Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization

analysis data-simulation magnetic-resonance-imaging magnetization mapping mri qmri quantitative quantitative-mri relaxometry

Last synced: 22 Jun 2026

https://github.com/pyomeca/pyomeca/

Python toolbox for biomechanics analysis

biomechanics biomechanics-analysis dynamics kinematics kinetics python xarray

Last synced: 22 Jun 2026

https://github.com/MikeHeiber/Excimontec

Excimontec is an open-source KMC simulation software package for modeling the optoelectronic processes in organic semiconductor materials and devices, such as OPVs, OLEDs, and more.

kinetic-monte-carlo mpi organic-semiconductors

Last synced: 22 Jun 2026