Ecosyste.ms: Summary

https://github.com/AnabelSMRuggiero/sbmltoodepy

A tool for creating Python implementations of SBML models.

Last synced: 23 Jun 2026

https://github.com/pySRURGS/pySRURGS

Symbolic regression by uniform random global search

binary-tree enumeration python python3 random symbolic-regression

Last synced: 23 Jun 2026

https://github.com/JuliaRheology/RHEOS.jl

RHEOS - Open Source Rheology data analysis software

biomechanics engineering fractional materials-science rheology viscoelastic

Last synced: 23 Jun 2026

https://github.com/finsberg/pulse

A software for solving problems in cardiac mechanics

Last synced: 23 Jun 2026

https://github.com/manaakiwhenua/virtualNicheR

virtualNicheR: creating virtual fundamental and realised niches

biogeography ecological-niche-modelling ecological-simulations ecology niche niche-modelling r virtual-ecology

Last synced: 23 Jun 2026

https://github.com/lisc-tools/lisc

Literature Scanner: Automated collection & analyses of the scientific literature.

literature-mining literature-review meta-analysis scientific-publications text-mining web-scraping

Last synced: 23 Jun 2026

https://github.com/anderson-cu-bioastronautics/dynamo_realsense-capture

A Python library with tools for capturing body shape and marker tracking with Intel RealSense D4XX Cameras

Last synced: 23 Jun 2026

https://github.com/engnadeau/pybotics

The Python Toolbox for Robotics

calibration doi dynamics hacktoberfest impedance-control inverse-kinematics kinematics math mathematics numpy pypi python python-toolbox research robot robotics scipy trajectory

Last synced: 23 Jun 2026

https://github.com/CosmiQ/CometTS

Comet Time Series Toolset for working with a time-series of remote sensing imagery and user defined polygons

Last synced: 23 Jun 2026

https://github.com/benmaier/netwulf

Interactive visualization of networks based on Ulf Aslak's d3 web app.

d3 network-visualization networkx python

Last synced: 23 Jun 2026

https://github.com/duetosymmetry/qnm

Python package for computing Kerr quasinormal mode frequencies, separation constants, and spherical-spheroidal mixing coefficients

black-holes general-relativity numerical-methods physics python scientific-computing

Last synced: 23 Jun 2026

https://github.com/heilerich/neurone_loader

Python module for loading EEG data recorded with Bittium NeurOne (formerly MegaEMG)

Last synced: 23 Jun 2026

https://github.com/enzo-project/enzo-dev

The Enzo adaptive mesh-refinement simulation code.

Last synced: 23 Jun 2026

https://github.com/JonasMoss/kdensity

An R package for kernel density estimation with parametric starts and asymmetric kernels.

asymmetric-kernels density-estimation kernel-density-estimation non-parametric

Last synced: 23 Jun 2026

https://github.com/Cohere-Labs-Community/rl

Generic reinforcement learning codebase in TensorFlow

machine-learning reinforcement-learning rl tensorflow

Last synced: 23 Jun 2026

https://github.com/GeoStat-Framework/pentapy

A Python toolbox for pentadiagonal linear systems

linear-algebra linear-systems math matrix pentadiagonal-linear-systems python solvers toolbox

Last synced: 23 Jun 2026

https://github.com/marekborowiec/spruceup

:christmas_tree: spruceup

Last synced: 23 Jun 2026

https://github.com/kavir1698/Agents.jl

Agent-based modeling framework in Julia

Last synced: 23 Jun 2026

https://github.com/r-cas/ryacas

Ryacas: R Interface to the Yacas Computer Algebra System

Last synced: 23 Jun 2026

https://github.com/PolymerGuy/AXITOM

Axisymmetric recontruction of tomography data acquired by a conical beam

Last synced: 23 Jun 2026

https://github.com/mlindsk/molic

Multivariate Outlierdetection In Contingency Tables

categorical-data contingency-tables decomposable-graphical-models high-dimensional-data outlier-detection

Last synced: 23 Jun 2026

https://github.com/giorginolab/plumed2-pycv/

PYCV module for PLUMED2. See the src/pycv directory.

Last synced: 23 Jun 2026

https://github.com/imr-framework/pypulseq

Pulseq in Python

mri mri-sequences pulse-sequences pulseq python

Last synced: 23 Jun 2026

https://github.com/ezsolti/feign/

Last synced: 23 Jun 2026

https://github.com/scikit-tda/kepler-mapper

Kepler Mapper: A flexible Python implementation of the Mapper algorithm.

data-visualization hacktoberfest kepler-mapper mapper-algorithm python tda topological-data-analysis visualization

Last synced: 23 Jun 2026

https://github.com/knaidoo29/mistree

A python package for constructing and analysing minimum spanning trees.

cosmology graph-theory levy-walks minimum-spanning-tree minimum-spanning-trees python random-walk

Last synced: 23 Jun 2026

https://github.com/shah314/gamultiknapsack

GKNAP: A Java and C++ package for solving the multidimensional knapsack problem

c-plus-plus genetic-algorithm java knapsack-problem knapsack-solver multiconstraint-knapsack multidimensional-knapsack multidimensional-knapsack-problem

Last synced: 23 Jun 2026

https://github.com/AliYoussef96/BCAW-Tool

BCAWT: Automated tool for codon usage bias analysis for molecular evolution

Last synced: 23 Jun 2026

https://github.com/UCBerkeleySETI/blimpy

Breakthrough Listen I/O Methods for Python

Last synced: 23 Jun 2026

https://github.com/Hazboun6/hasasia

Python package for calculating pulsar timing array sensitivity curves.

Last synced: 23 Jun 2026

https://github.com/paul-buerkner/thurstonianIRT

Fit Thurstonian IRT models in R using Stan, lavaan, or Mplus

Last synced: 23 Jun 2026

https://github.com/chand-lab/openEyeTrack

an open source multi-threaded eye tracker

Last synced: 22 Jun 2026

https://github.com/slithiaote/lepton

lepton is a automaton for literate executable papers

Last synced: 23 Jun 2026

https://github.com/kellykochanski/rescal-snow

A model of dunes and snow-waves

Last synced: 23 Jun 2026

https://github.com/ramaniitrgoyal92/Modeling_of_Tensegrity_Structures_MOTES

Modeling_of_Tensegrity_Structures(MOTES)

Last synced: 23 Jun 2026

https://github.com/kb-press/ndsplines/

Multi-dimensional B-splines

Last synced: 22 Jun 2026

https://github.com/JedS6391/LGP

A robust Linear Genetic Programming implementation on the JVM using Kotlin.

ai genetic-programming gp jvm kotlin lgp linear-genetic-programming machine-learning

Last synced: 22 Jun 2026

https://github.com/ai4os/DEEPaaS

A REST API to serve machine learning and deep learning models

aiohttp artificial-intelligence data-science deep-hybrid-datacloud deep-learning deepaas-api h2020 http machine-learning machinelearning neural-network neural-networks rest-api restful-api

Last synced: 23 Jun 2026

https://github.com/zfit/phasespace/

Phase space generation implemented in TensorFlow

hep physics-simulation

Last synced: 22 Jun 2026

https://github.com/TerrainBento/umami

Calculate topographic metrics for assessing model-data fit

Last synced: 22 Jun 2026

https://github.com/OttaviaE/DscoreApp

A Shiny Web Application for computing the IAT D-score

Last synced: 22 Jun 2026

https://github.com/stgl/pymccrgb

Multiscale curvature classification of point clouds with color features

classification-algorithm geomorphology lidar photogrammetry point-cloud supervised-learning

Last synced: 22 Jun 2026

https://github.com/ropensci/lightr

Import spectral data and related metadata in R

file-import r r-package reproducibility reproducible-research reproducible-science spectral-data spectroscopy

Last synced: 22 Jun 2026

https://github.com/ropensci/workloopR/

💪 Analysis of work loops and other data from muscle physiology experiments

ddf muscle-force muscle-physiology-experiments r r-package rstats tetanus work-loop workloop

Last synced: 22 Jun 2026

https://github.com/pyscal/pyscal

Python library written in C++ for calculation of local atomic structural environment

bond-order-parameters lammps molecular-dynamics nucleation order-parameters solid-state-physics steinhardt steinhardt-bond-order-parameters

Last synced: 22 Jun 2026

https://github.com/matt002/GaitPy

Last synced: 23 Jun 2026

https://gitlab.com/tesch1/cppduals

Fast dual number implementation for C++. Docs: https://tesch1.gitlab.io/cppduals

C++ ad automatic differentiation dual dual number eigen mathematics template library

Last synced: 22 Jun 2026

https://github.com/ModelOriented/modelStudio

📍 Interactive Studio for Explanatory Model Analysis

ai explainable explainable-ai explainable-machine-learning explanatory-model-analysis human iml interactive interactivity interpretability interpretable interpretable-machine-learning learning machine model model-visualization r visualization xai

Last synced: 22 Jun 2026

https://github.com/mrgprasad/kanapy

Synthetic microstructure generator. Online documentation:

ellipsoid-packing finite-element-analysis materials-science microstructure-generator

Last synced: 22 Jun 2026

https://github.com/jnoynaert/PressureDrop.jl

Package for computing pressure profiles for gas lift optimization of oil & gas wells.

Last synced: 22 Jun 2026

https://github.com/sambitdash/PDFIO.jl

PDF Reader Library for Native Julia.

julia pdf pdf-development pdf-document pdf-files pdf-library pdf-specification text-extraction

Last synced: 22 Jun 2026

https://github.com/ropensci/rnassqs

R interface for the USDA National Agricultural Statistical Service's (NASS) 'Quick Stats' API (https://quickstats.nass.usda.gov/api)

Last synced: 22 Jun 2026

https://github.com/MaciejDanko/hopit

Hierarchical Ordered Probit Models with Application to Reporting Heterogeneity

Last synced: 22 Jun 2026

https://github.com/dfm/emcee

The Python ensemble sampling toolkit for affine-invariant MCMC

mcmc mcmc-sampler probabilistic-data-analysis python

Last synced: 22 Jun 2026

https://github.com/martinfleis/momepy

Urban Morphology Measuring Toolkit

Last synced: 22 Jun 2026

https://github.com/KaiWenger/memochange

An R package for identifying structural changes in time series.

Last synced: 22 Jun 2026

https://github.com/junbinzhao/FluxCalR/

This R package is used to calculate CO2 and CH4 gas fluxes measured with static chamber method. It provide a easy way to calculate multiple flux measurements from one data file.

carbon-flux chamber co2 flux-measurement lgr los-gatos methane ultraportable-gas-analyzers

Last synced: 22 Jun 2026

https://github.com/HypothesisWorks/hypothesis/

The property-based testing library for Python

fuzzing property-based-testing python testing

Last synced: 23 Jun 2026

https://github.com/MLHale/eyestream

This project time-synchronously integrates eye tracker data collected from a Gazepoint GP3 data with an experimentation platform API via websocket

Last synced: 22 Jun 2026

https://github.com/michellab/BioSimSpace

Code and resources for the EPSRC BioSimSpace project.

biomolecular-simulation ccpbiosim computational-biology computational-chemistry computational-physics interoperability molecular-dynamics reproducibility reproducible-research

Last synced: 22 Jun 2026

https://github.com/imr-framework/virtual-scanner

An end-to-end hybrid MR simulator/console

mri

Last synced: 22 Jun 2026

https://github.com/marouenbg/ACHR.cu

A GPU implementation of the sampling algorithm ACHR.

cuda metabolic-network parallel-computing sampling

Last synced: 22 Jun 2026

https://github.com/seanpue/graphtransliterator

A graph-based transliteration tool

Last synced: 22 Jun 2026

https://github.com/dmentipl/plonk

Smoothed particle hydrodynamics analysis and visualization with Python.

astronomy python smoothed-particle-hydrodynamics visualization

Last synced: 22 Jun 2026

https://github.com/paudetseis/Telewavesim

Teleseismic body wave modeling through stacks of (submarine/anisotropic) layers

anisotropy fortran geophysics modeling obs plane-waves python receiver-functions seismology sks

Last synced: 22 Jun 2026

https://github.com/tesselle/tabula

Analysis and Visualization of Archaeological Count Data - :exclamation: Moved to https://codeberg.org/tesselle/tabula

archaeological-science archaeology data-visualization r-package

Last synced: 22 Jun 2026

https://github.com/complexvariables/ComplexRegions.jl

(Julia) Package for working with curves and regions in the extended complex plane.

Last synced: 23 Jun 2026

https://github.com/data-edu/tidyLPA

Easily carry out Latent Profile Analysis (LPA) using open-source or commercial software

Last synced: 22 Jun 2026

https://gitlab.com/gdetor/genetic_alg

Last synced: 22 Jun 2026

https://github.com/ropensci/opentripplanner

An R package to set up and use OpenTripPlanner (OTP) as a local or remote multimodal trip planner.

data isochrones java opentripplanner otp public-transport r routing transport transportation-planning

Last synced: 22 Jun 2026

https://github.com/PhanstielLab/coralp

Flexible visualization of the human phosphatome

Last synced: 22 Jun 2026

https://github.com/mgdotdev/libRL

A Python library for characterizing Microwave Absorption

chemistry materials-science microwave-absorption umkc

Last synced: 22 Jun 2026

https://github.com/TrashBirdEcology/bbsAssistant/

An R package for downloading and handling data and information from the North American Breeding Bird Survey.

bbs-data birds breeding-bird-survey data-downloader ecology ornithology point-count usgs

Last synced: 22 Jun 2026

https://github.com/JonasMoss/univariateML

An R package for maximum likelihood estimation of univariate densities.

density estimation maximum-likelihood

Last synced: 22 Jun 2026

https://github.com/PhanstielLab/bedtoolsr

R package wrapping bedtools

Last synced: 22 Jun 2026

https://github.com/USCbiostats/xrnet

R Package for Hierarchical Regularized Regression to Incorporate External Data

Last synced: 22 Jun 2026

https://github.com/BouchardLab/pyuoi

The Union of Intersections Framework in Python

Last synced: 22 Jun 2026

https://github.com/alcantarar/dryft

Correcting drift in ground reaction force data during treadmill running

Last synced: 22 Jun 2026

https://github.com/cimentadaj/perccalc/

Estimate percentile differences from ordered categorical data

Last synced: 22 Jun 2026

https://github.com/lskatz/mashtree

:deciduous_tree: Create a tree using Mash distances

bioperl mash mash-distances tree

Last synced: 22 Jun 2026

https://github.com/mlr-org/mlr3

mlr3: Machine Learning in R - next generation

classification data-science machine-learning mlr3 r r-package regression

Last synced: 22 Jun 2026

https://github.com/jbloomlab/alignparse

Align sequences and then parse features.

Last synced: 22 Jun 2026

https://github.com/ImperialCollegeLondon/sharpy

Simulation of High Aspect Ratio aeroplanes and wind turbines in Python: a nonlinear aeroelastic code

aeroelasticity aeronautics simulation structural-dynamics structures wind-turbines

Last synced: 22 Jun 2026

https://github.com/0todd0000/mwarp1d

Manual one-dimensional data warping and nonlinear registration in Python and PyQt

Last synced: 22 Jun 2026

https://github.com/ytree-project/ytree

A Python package for analyzing tree data and especially merger trees.

analysis astronomy astrophysics data merger-trees python simulations trees

Last synced: 23 Jun 2026

https://github.com/mne-tools/mne-bids

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

bids eeg electroencephalography ieeg magnetoencephalography meg mne neuroimaging neuroscience

Last synced: 22 Jun 2026

https://github.com/elyiorgos/sleeppy

Last synced: 22 Jun 2026

https://github.com/snowformatics/BlasterQt

Initial Import

Last synced: 22 Jun 2026

https://github.com/AMReX-Astro/MAESTROeX

A C++ low Mach number stellar hydrodynamics code

amrex astrophysical-simulation

Last synced: 22 Jun 2026

https://github.com/LRydin/KramersMoyal

kramersmoyal: Kramers-Moyal coefficients for stochastic data of any dimension, to any desired order

diffusion drift drift-diffusion kernel-density-estimation nadaraya-watson stochastic stochastic-differential-equations stochastic-process

Last synced: 22 Jun 2026

https://github.com/xanaduAI/thewalrus

A library for the calculation of hafnians, Hermite polynomials and Gaussian boson sampling.

algorithm combinatorics graphs matrix optimization physics quantum quantum-computing

Last synced: 23 Jun 2026

https://github.com/owlbarn/owl_ode/

Owl's Differential Equation Solvers

differential-equations engineering-computation ocaml ode ode-solver scientific-computing sundials

Last synced: 22 Jun 2026

https://gitlab.com/materials-modeling/wulffpack

[A package for Wulff constructions.](https://wulffpack.materialsmodeling.org)

Wullf construction atomic structure nanoparticles surface energy surfaces thermodynamics

Last synced: 22 Jun 2026

https://github.com/SwathiSheshadri/pose3d

3D reconstruction toolbox for behavior tracked with multiple cameras

Last synced: 22 Jun 2026

https://github.com/stfbnc/fathon

python package for DFA (Detrended Fluctuation Analysis) and related algorithms

dcca detrended-fluctuation-analysis dfa hurst-exponent mfdfa multifractal-analysis multifractal-detrended-fluctuation multifractal-spectrum python scientific-software

Last synced: 22 Jun 2026