Ecosyste.ms: Summary

https://github.com/meolic/biddy

A multi-platform Binary Decision Diagrams package

Last synced: 22 Jun 2026

https://github.com/compbiocore/RSeqAn

SeqAn headers for R

Last synced: 22 Jun 2026

https://github.com/bastistician/polyCub

An R package for numerical integration over polygonal domains

numerical-integration polygons r

Last synced: 23 Jun 2026

https://github.com/gasparl/citapp_pc

CITapp: a response time-based Concealed Information Test lie detector web application. This method aims to reveal whether or not a certain information detail (e.g. a photo taken from the scene of a recent burglary) is known to the tested person.

concealed-information-test deception forensics javascript-applications psychology-experiments response-time

Last synced: 22 Jun 2026

https://github.com/vmagnin/gtk-fortran

A GTK / Fortran binding, and its documentation (in the Wiki tab).

bindings cross-platform fortran fortran-package-manager graphical-user-interface graphics gtk gtk-fortran gtk4 gui

Last synced: 22 Jun 2026

https://github.com/SAFRAN-LAB/HODLR

A fast, accurate direct solver and determinant computation for dense linear systems

c-plus-plus fast-algorithms hierarchical-matrix kernel matrices solver

Last synced: 22 Jun 2026

https://github.com/bmorris3/arcesetc

Exposure time calculator for the ARC Echelle Spectrograph (ARCES) on the Apache Point Observatory 3.5 m Telescope

astronomy exposure-calculator spectroscopy

Last synced: 22 Jun 2026

https://github.com/andrewthomasjones/BoltzMM

Boltzmann Machines with MM Algorithms

Last synced: 22 Jun 2026

https://github.com/axopy/axopy

A Python Library for Implementing Human-Computer Interface Experiments

brain-computer-interface electrophysiology experiment-design gui human-computer-interaction prosthetics qt

Last synced: 23 Jun 2026

https://github.com/UofABioinformaticsHub/strandCheckR

Last synced: 22 Jun 2026

https://github.com/Chilipp/straditize

⛔️ Python package for digitizing pollen diagrams

Last synced: 22 Jun 2026

https://github.com/jschnab/pyms-plot

Graphical user interface for easy plotting and statistical analysis of mycorrhizal colonization data.

Last synced: 23 Jun 2026

https://github.com/pwollstadt/IDTxl

The Information Dynamics Toolkit xl (IDTxl) is a comprehensive software package for efficient inference of networks and their node dynamics from multivariate time series data using information theory.

active-information-storage complex-systems information-theory partial-information-decomposition transfer-entropy

Last synced: 23 Jun 2026

https://github.com/lateral/crystal-ball

A "navigator" for exploring 2-dimensional hyperbolic space using the Poincaré disc model. The entire graph or point configuration can be translated and rotated by dragging the ambient, and individual points can be moved, too.

geometry hyperbolic-geometry poincare-embeddings

Last synced: 22 Jun 2026

https://github.com/mikldk/mitolina

MITOchondrial LINeage Analysis

Last synced: 23 Jun 2026

https://github.com/python-hydro/pyro2

A framework for hydrodynamics explorations and prototyping

advection astrophysical-simulation finite-volume finite-volume-methods hydrodynamics multigrid pde pyro python simulation solver

Last synced: 22 Jun 2026

https://github.com/miykael/atlasreader

Python interface for generating coordinate tables and region labels from statistical MRI images

Last synced: 23 Jun 2026

https://github.com/ropensci/emld

:package: JSON-LD representation of EML

Last synced: 22 Jun 2026

https://github.com/seabbs/getTBinR

An R package for accessing and summarising the World Health Organisation Tuberculosis data.

binder-ready data eda package r rstats shiny tb-data tb-incidence-rates tuberculosis who world-health-organization

Last synced: 22 Jun 2026

https://github.com/PlanetFormationLab/eddy

Python tools to recover precise rotation profiles of disks.

Last synced: 23 Jun 2026

https://github.com/ropensci/tacmagic

tacmagic: PET Analysis in R

mri neuroimaging neuroscience neuroscience-methods pet pet-mr positron positron-emission-tomography r statistics

Last synced: 22 Jun 2026

https://github.com/eendebakpt/oapackage

Orthogonal Array package

Last synced: 22 Jun 2026

https://github.com/evan-l-munson/SAoTD

Sentiment Analysis of Twitter Data (saotd)

bing-lexicon latent-dirichlet-allocation n-grams plot r sentiment-analysis tidy-data topicanalysis tweets twitter-data

Last synced: 22 Jun 2026

https://github.com/tleonardi/bedparse

Python module and CLI tool to perform operations on BED files

bed-files bioinformatics cli

Last synced: 22 Jun 2026

https://github.com/a-slide/pycoQC

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

computing-metrics generates-plots jupyter-notebook nanopore

Last synced: 22 Jun 2026

https://github.com/andrewjpage/tiptoft

Predict plasmids from uncorrected long read data

bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases kmer long-reads nanopore oxford-nanopore pacbio pathogen plasmid plasmidfinder research uncorrected

Last synced: 22 Jun 2026

https://github.com/atomneb/AtomNeb-idl

AtomNeb - IDL/GDL Library for Atomic Data of Ionized Nebulae

atomic-datasets atomneb chianti-atomic-database collisionally-excited-lines recombination-coefficients recombination-lines

Last synced: 23 Jun 2026

https://github.com/litrl/litrl_code

litrl browser and detectors

Last synced: 22 Jun 2026

https://github.com/ScottKolo/suitesparse-matrix-collection-website

A web interface for the SuiteSparse Matrix Collection, formerly known as the University of Florida Sparse Matrix Collection

Last synced: 22 Jun 2026

https://github.com/athrom/CytobankAPIstats

Contains code and documentation for "CytobankAPIstats" library available on CRAN

Last synced: 22 Jun 2026

https://github.com/JuliaInterop/JuliaCall

Embed Julia in R

julia r

Last synced: 22 Jun 2026

https://github.com/JuliaMusic/MIDI.jl

A Julia library for handling MIDI files

audio interface julia midi notes

Last synced: 22 Jun 2026

https://github.com/Romain-Thomas-Shef/dfitspy

FITS file header search and display

Last synced: 22 Jun 2026

https://github.com/climateequityreferenceproject/cerc-web

The web interface to the Climate Equity Reference Calculator (CERc)

climate-change climate-justice effort-sharing equity-calculator unfccc

Last synced: 22 Jun 2026

https://github.com/ucgmsim/GMSimViz

Automated 3D Visualization of Ground Motion Simulation with Generic Mapping Tools(GMT)

Last synced: 22 Jun 2026

https://github.com/mrecos/klrfome

Kernel Logistic Regression on Focal Mean Embeddings

archaeological-science kernel kernel-logistic-regression rstats spatial-analysis

Last synced: 22 Jun 2026

https://github.com/bjmorgan/pyscses

PYthon Space-Charge Site-Explicit Solver

Last synced: 22 Jun 2026

https://github.com/KVSlab/morphMan

A collection of tools for manipulation of morphological features in patient-specific geometries

biomedical geometric-algorithms morphology vascular

Last synced: 23 Jun 2026

https://github.com/garrettj403/QMix/

Simulate the behavior of SIS junctions

physics python radio-astronomy simulation sis-mixer

Last synced: 22 Jun 2026

https://github.com/3dct/open_iA

A tool for the visual analysis and processing of volumetric datasets, with a focus on industrial computed tomography.

Last synced: 22 Jun 2026

https://github.com/Hoosier-Clusters/clusim

An extended package for clustering similarity

Last synced: 22 Jun 2026

https://github.com/DistrictDataLabs/yellowbrick

Visual analysis and diagnostic tools to facilitate machine learning model selection.

anaconda estimator machine-learning matplotlib model-selection python scikit-learn visual-analysis visualization visualizer

Last synced: 23 Jun 2026

https://github.com/stablemarkets/ChiRP

Chinese Restaurant Process Models for Regression and Clustering. Master branch contains latest stable build.

bayesian bayesian-statistics nonparametric-regression nonparametric-statistics nonparametricbayes r

Last synced: 23 Jun 2026

https://github.com/CFSAN-Biostatistics/vcftoolz

Tools for working with Variant Call Format files.

Last synced: 23 Jun 2026

https://bitbucket.org/ocellarisproject/ocellaris

Ocellaris is a discontinuous Galerkin FEM solver for multiphase free surface flows using FEniCS and PETSc as the backends

Last synced: 22 Jun 2026

https://github.com/zabore/riskclustr

R package of functions for the study of etiologic heterogeneity

Last synced: 23 Jun 2026

https://github.com/kLabUM/rrcf

🌲 Implementation of the Robust Random Cut Forest algorithm for anomaly detection on streams

anomaly-detection detect-outliers machine-learning outliers python random-forest robust-random-cut-forest streaming-data tree

Last synced: 23 Jun 2026

https://github.com/ailiop/idvf

Iterative inversion of deformation vector field with adaptive bi-residual feedback control

Last synced: 23 Jun 2026

https://github.com/vallenderlab/MicrobiomeR

A comprehensive and customizable R package for microbiome analysis.

alpha-diversity beta-diversity bioinformatics color-palette comprehensive metacoder metagenomics microbial-genomics microbiology microbiome microbiome-analysis pcoa permanova phyloseq r rstats visualization

Last synced: 22 Jun 2026

https://github.com/mir-am/LightTwinSVM

LightTwinSVM Program - Simple and Fast Implementation of Standard TwinSVM Classifier

classification classifier clippdcd code implementation machine-learning pattern-recognition python svm-classifier twinsvm

Last synced: 22 Jun 2026

https://github.com/NESCent/TraitDB

Trait Database using Rails 4

Last synced: 23 Jun 2026

https://bitbucket.org/mpi4py/mpi4py-fft

mpi4py-fft is a Python package for computing Fast Fourier Transforms (FFTs).

Last synced: 22 Jun 2026

https://github.com/laempy/pyoints

Pyoints: A Python package for point cloud, voxel and raster processing.

Last synced: 22 Jun 2026

https://github.com/hiclib/iced

Normalizing Hi-C contact counts efficiently

i

Last synced: 22 Jun 2026

https://github.com/rrwick/Badread

a long read simulator that can imitate many types of read problems

Last synced: 22 Jun 2026

https://github.com/JuliaDiff/TaylorSeries.jl

Taylor polynomial expansions in one and several independent variables.

automatic-differentiation julia polynomials taylor-expansions

Last synced: 22 Jun 2026

https://github.com/Nance-Lab/diff_classifier

This project aims to take existing analyses of nanoparticle diffusion that I have worked on previously and expand the analysis to additional features.

Last synced: 22 Jun 2026

https://github.com/capytaine/capytaine

Python BEM solver for linear potential flow, based on Nemoh.

boundary-element-method fortran hydrodynamics potential-flow python sea-keeping water-wave wave-energy

Last synced: 23 Jun 2026

https://github.com/JuliaText/Embeddings.jl/

Functions and data dependencies for loading various word embeddings (Word2Vec, FastText, GLoVE)

Last synced: 22 Jun 2026

https://github.com/underworldcode/UWGeodynamics

Underworld Geodynamics

geodynamics geodynamics-models geophysics hacktoberfest hacktoberfest2020 underworld-modelling

Last synced: 22 Jun 2026

https://github.com/stenskjaer/samewords

Automatically annotate potentially ambiguous words in critical text editions made with LaTeX and reledmac.

Last synced: 23 Jun 2026

https://github.com/annoviko/pyclustering

pyclustering is a Python, C++ data mining library.

algorithms c-plus-plus clustering data-mining data-science machine-learning neural-networks oscillatory-networks python python3

Last synced: 22 Jun 2026

https://github.com/maximtrp/scikit-posthocs

Multiple Pairwise Comparisons (Post Hoc) Tests in Python

posthoc-comparisons posthoc-tests python scikit statistical-analysis statistics stats

Last synced: 23 Jun 2026

https://github.com/lucask07/instrbuilder

Last synced: 22 Jun 2026

https://github.com/neurodsp-tools/neurodsp

Digital signal processing for neural time series.

Last synced: 22 Jun 2026

https://github.com/naturalis/wgs2ncbi

Toolkit for preparing genomes for submission to NCBI

bioinformatics dataset genome-annotation genomics

Last synced: 23 Jun 2026

https://github.com/KateHyoung/UTDEventData

An R package to retrieve political event data from the UTD API server

bigdata data-incentive political-event utd-server

Last synced: 23 Jun 2026

https://github.com/shawnbanasick/kade

KADE is an open-source application for the analysis of Q methodology data. See detailed description below. ⬇️

Last synced: 22 Jun 2026

https://github.com/usnistgov/CEGO

C++11 Evolutionary Global Optimization

Last synced: 23 Jun 2026

https://github.com/zmeers/ggparliament

Simple parliament plots using ggplot2

dataviz ggplot2 parliament-charts r r-package seat-count visualization

Last synced: 22 Jun 2026

https://github.com/FranzKrah/rGUIDANCE

rGUIDANCE – alignment confidence score computation in R

Last synced: 23 Jun 2026

https://github.com/edifice1989/rocker-c-rex

Those source code are prepared to build a docker image of shiny web application

Last synced: 22 Jun 2026

https://github.com/PMEAL/porespy

A set of tools for characterizing and analyzing 3D images of porous materials

3d-images image-analysis porespy porous-materials porous-media python scientific-visualization tomography voxel-generator

Last synced: 23 Jun 2026

https://github.com/mviereck/x11docker

Run GUI applications and desktops in docker and podman containers. Focus on security.

containers desktop docker gpu gui html5 nerdctl podman printer pulseaudio sandbox sound ssh vnc wayland webcam x x11 xorg xpra

Last synced: 23 Jun 2026

https://github.com/justinalsing/dlmmc

Dynamical linear modeling (DLM) regression code for analysis of atmospheric time-series data.

Last synced: 22 Jun 2026

https://github.com/dpzwick/ppiclF/

A parallel particle-in-cell library in Fortran.

Last synced: 22 Jun 2026

https://github.com/ModelOriented/pyCeterisParibus

Python library for Ceteris Paribus Plots (What-if plots)

ceteris-paribus-plots explainable-ai python-library

Last synced: 23 Jun 2026

https://github.com/stulp/dmpbbo

Python/C++ library for Dynamical Movement Primitives and Black-Box Optimization

Last synced: 22 Jun 2026

https://github.com/jason-neal/eniric

Extended Near InfraRed spectra Information Content analysis.

astronomy doppler python3 radial-velocity spectroscopy

Last synced: 23 Jun 2026

https://github.com/jlincbio/cred

Chem-seq Read Enrichment Discovery: CRED

Last synced: 22 Jun 2026

https://github.com/abatten/fruitbat

A fast radio burst (FRB) redshift estimation package written in Python.

astronomy astrophysics dispersion dm frb measure python radio redshift

Last synced: 22 Jun 2026

https://github.com/vsoch/watchme

Reproducible watchers for research

changes cron reproducible watcher website

Last synced: 23 Jun 2026

https://github.com/mikahama/uralicNLP

An NLP library for Uralic languages such as Finnish, Skolt Sami, Moksha and so on. Also supporting some non-Uralic languages such as Spanish, French, Arabic, Swedish, Norwegian, Russian and English. LLMs, FSTs and More!

clustering conll-u constraint-grammar dutch finnish french fst german large-language-model lemmatizer llm moksha morphological-analysis morphological-generation nlp-library russian sami spanish swedish uralic-languages

Last synced: 22 Jun 2026

https://github.com/brandondube/prysm

physical optics: integrated modeling, phase retrieval, segmented systems, polynomials and fitting, sequential raytracing...

4d diffraction forbes-polynomial gpu-computing modeling mtf mtf-mapper optics phase-retrieval phasecam propagation psf python q-polynomial raytracing trioptics wavefront wavefront-sensing zernike zygo

Last synced: 22 Jun 2026

https://github.com/skyportal/skyportal

Collaborative platform for time-domain astronomy

astronomy collaborative-research lsst machine-learning transient-astronomy variable-stars

Last synced: 23 Jun 2026

https://github.com/davekinkead/reasons

Web based argument mapping tools

argument-mapping critical-thinking html logic

Last synced: 22 Jun 2026

https://github.com/AMReX-Codes/amrex

AMReX: Software Framework for Block Structured AMR

adaptive-mesh-refinement amr amrex high-performance-computing hpsf scientific-computing

Last synced: 23 Jun 2026

https://github.com/handley-lab/anesthetic

Nested Sampling post-processing and plotting

bayesian-inference fastkde matplotlib mcmc nested-sampling numpy pandas samples scipy

Last synced: 22 Jun 2026

https://github.com/EnvModellingGroup/hrds

Hierarchical raster data set: smooth interpolation of raster files at different resolutions for multiscale modelling

gis modelling numerical-modelling science-research

Last synced: 23 Jun 2026

https://github.com/RadioAstronomySoftwareGroup/pyuvsim/

A ultra-high precision package for simulating radio interferometers in python on compute clusters.

Last synced: 23 Jun 2026

https://github.com/tqdm/tqdm

:zap: A Fast, Extensible Progress Bar for Python and CLI

cli closember console discord gui jupyter keras meter pandas parallel progress progress-bar progressbar progressmeter python rate telegram terminal time utilities

Last synced: 23 Jun 2026

https://github.com/osorensen/hdme

R-package containing penalized regression methods for High-Dimensional Measurement Error problems (errors-in-variables)

Last synced: 22 Jun 2026

https://github.com/pyvista/pyvista

3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)

3d fem finite-element-analysis finite-elements hacktoberfest mesh mesh-processing meshviewer open-science plotting python scientific-research scientific-visualization visualization vtk