Ecosyste.ms: Summary

https://github.com/adrn/gala

Galactic and gravitational dynamics in Python

astronomy astrophysics astropy-affiliated dynamics physics python

Last synced: 23 Jun 2026

https://github.com/uglymol/uglymol

Macromolecular viewer for crystallographers (WebGL)

ccp4 crystallography electron-density macromolecular-crystallography molecular-graphics webgl

Last synced: 23 Jun 2026

https://github.com/conradsnicta/armadillo-gmm

gmm_diag and gmm_full: C++ classes for multi-threaded Gaussian mixture models and Expectation-Maximisation

armadillo clustering clustering-algorithm cpp em-algorithm expectation-maximization gaussian-mixture-models gmm k-means k-means-clustering machine-learning mapreduce openmp statistics

Last synced: 23 Jun 2026

https://github.com/singularityhub/sregistry

server for storage and management of singularity images

containers management registry singularity singularity-containers singularityhub

Last synced: 23 Jun 2026

https://github.com/genexplain/geneXplainR

An R interface for the geneXplain platform

Last synced: 23 Jun 2026

https://github.com/biogo/ncbi

bíogo ncbi utilities repository

Last synced: 23 Jun 2026

https://github.com/bebatut/enasearch

A Python library for interacting with ENA's API

api api-client ena

Last synced: 23 Jun 2026

https://github.com/cokelaer/spectrum

Spectral Analysis in Python

arma fourier pburg periodogram psd python spectral

Last synced: 23 Jun 2026

https://github.com/JuliaDynamics/ResumableFunctions.jl

C# style generators a.k.a. semi-coroutines for Julia.

finite-state-machine iterator julia semi-coroutine stackless

Last synced: 23 Jun 2026

https://github.com/josejimenezluna/pyGPGO

Bayesian optimization for Python

bayesian machine-learning optimization

Last synced: 23 Jun 2026

https://github.com/mdbloice/Augmentor

Image augmentation library in Python for machine learning.

augmentation deep-learning machine-learning neural-networks

Last synced: 23 Jun 2026

https://github.com/haythamfayek/MatDL

A Lightweight Deep Learning Library in MATLAB

deep-learning machine-learning neural-networks

Last synced: 23 Jun 2026

https://github.com/scikit-learn-contrib/forest-confidence-interval

Confidence intervals for scikit-learn forest algorithms

Last synced: 23 Jun 2026

https://github.com/randlab/hytool

Hytool is a matlab toolbox for the interpretation of hydraulic tests in wells. The toolbox contains analytical solutions used to describe groundwater flow around wells, and functions for importing, displaying, and fitting a model to the data.

data-analysis hydrogeology matlab pumping-test well-testing

Last synced: 23 Jun 2026

https://github.com/ropensci/codemetar

an R package for generating and working with codemeta

codemeta json-ld metadata peer-reviewed r r-package rstats

Last synced: 23 Jun 2026

https://github.com/weecology/retriever

Quickly download, clean up, and install public datasets into a database management system

data data-retrieval data-science dataset datasets hacktobefest python

Last synced: 23 Jun 2026

https://github.com/msmbuilder/mdentropy/

Analyze correlated motions in MD trajectories with only a few lines of Python.

Last synced: 23 Jun 2026

https://github.com/ornlneutronimaging/ImagingReso

Resonance Imaging

Last synced: 23 Jun 2026

https://github.com/JuliaDynamics/DynamicalBilliards.jl

An easy-to-use, modular, extendable and absurdly fast Julia package for dynamical billiards in two dimensions.

billiard-systems billiards chaos geometry julia julialang lyapunov-spectrum models particles physics

Last synced: 23 Jun 2026

https://github.com/virgesmith/UKCensusAPI

UK Census Data queries and downloads from python or R

data-science python r

Last synced: 22 Jun 2026

https://github.com/neuropsychology/Neuropsydia.py/

A Python Module for Creating Experiments, Tasks and Questionnaires.

assessment experiments neuropsychology psychology python questionnaire tasks

Last synced: 23 Jun 2026

https://github.com/raamana/hiwenet

Histogram-weighted Networks for Connectivity & Advanced Analysis in Neuroscience

biomarkers connectivity feature-extraction graph histogram-weighted-networks machine-learning neuroimaging neuroscience

Last synced: 23 Jun 2026

https://github.com/pygbe/pygbe

PyGBe: Python, GPUs and Boundary elements for electrostatics

Last synced: 23 Jun 2026

https://github.com/ros-controls/joss_paper

Last synced: 23 Jun 2026

https://github.com/physicsdavid/mPicker

WEBGL 3D object picker for p5.js

Last synced: 23 Jun 2026

https://github.com/ropensci/bikedata

:bike: Extract data from public hire bicycle systems

bicycle-hire bicycle-hire-systems bike-data bike-hire database peer-reviewed r r-package rstats

Last synced: 23 Jun 2026

https://github.com/Genomon-Project/paplot/

paplot creates various dynamic and interactive reports for cancer genome analysis.

Last synced: 23 Jun 2026

https://github.com/xBimTeam/XbimEssentials

A .NET library to work with data in the IFC format. This is the core component of the Xbim Toolkit

bim cobie express ifc ifc2x3 ifc4 iso16739 openbim step21

Last synced: 23 Jun 2026

https://github.com/ITWM-TVFS/Ensight4Matlab

Ensight4Matlab let's you read, process, and write files in EnSight Case Gold format from your C++ or MATLAB® code.

c-plus-plus cfd ensight matlab matlab-wrapper

Last synced: 22 Jun 2026

https://github.com/ropensci/tidyhydat

An R package to import Water Survey of Canada hydrometric data and make it tidy

citz government-data hydrology hydrometrics r r-package rstats tidy-data water-resources

Last synced: 23 Jun 2026

https://github.com/iljah/hdintegrator

Last synced: 23 Jun 2026

https://github.com/dsuess/mpnum

Matrix Product Representation library for Python

dmrg matrix-product tensor-train

Last synced: 23 Jun 2026

https://github.com/ropensci-archive/cleanEHR

:warning: ARCHIVED :warning: Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical data from CC-HIC

big-data critical-care electronic-health-record healthcare intensive-care r r-package rstats

Last synced: 23 Jun 2026

https://github.com/bjodah/pyodesys

∫ Straightforward numerical integration of systems of ordinary differential equations

code-generation initial-value-problem numerical-codes ordinary-differential-equations symbolic-manipulation sympy

Last synced: 23 Jun 2026

https://github.com/paulgovan/BayesianNetwork

Bayesian Network Modeling and Analysis

bayesian-networks learning-algorithm network-measures r

Last synced: 23 Jun 2026

https://github.com/arfc/moltres

Repository for Moltres, a code for simulating Molten Salt Reactors

fem finite-elements molten-salt-reactors moose multi-physics object-oriented parallel software

Last synced: 23 Jun 2026

https://github.com/databio/simpleCache

Simplified R caching for reproducible big data projects

Last synced: 23 Jun 2026

https://github.com/ljvmiranda921/pyswarms

A research toolkit for particle swarm optimization in Python

algorithm discrete-optimization global-optimization machine-learning metaheuristics optimization optimization-algorithms optimization-tools particle-swarm-optimization pso swarm-intelligence

Last synced: 23 Jun 2026

https://github.com/lebebr01/highlightHTML

R package to seamlessly format text and summary tables written in markdown

html markdown r r-markdown

Last synced: 23 Jun 2026

https://github.com/kortschak/arrgh

Go interface to the OpenCPU R server system

Last synced: 23 Jun 2026

https://github.com/chloroExtractorTeam/chloroExtractor

Last synced: 23 Jun 2026

https://github.com/sjspielman/phyphy

Python HyPhy: Facilitating HyPhy execution and parsing

software

Last synced: 23 Jun 2026

https://github.com/oliviergimenez/GammaGompertzCR

Fit Gamma-Gompertz model to capture-recapture data using data cloning

bayesian-inference capture-recapture data-cloning individual-heterogeneity maximum-likelihood-estimation mcmc survival

Last synced: 22 Jun 2026

https://github.com/BirolLab/xmatchview

🗻 Visualization of genome/gene sequence synteny

Last synced: 23 Jun 2026

https://github.com/bjodah/pyneqsys

Solve symbolically defined systems of non-linear equations numerically.

least-squares nonlinear-equations root-finding symbolic-manipulation sympy

Last synced: 23 Jun 2026

https://github.com/scikit-learn-contrib/category_encoders

A library of sklearn compatible categorical variable encoders

Last synced: 23 Jun 2026

https://github.com/BIOS-IMASL/chesweet

CheSweet: chemical shifts for glycans

chemical-shift glycans python

Last synced: 23 Jun 2026

https://github.com/SCIInstitute/PFEIFER

Signal processing toolbox for cardiac potential recordings.

ecg-imaging ecg-signal electrocardiography signal-processing

Last synced: 23 Jun 2026

https://github.com/ropensci/drake

An R-focused pipeline toolkit for reproducibility and high-performance computing

data-science drake high-performance-computing makefile peer-reviewed pipeline r r-package reproducibility reproducible-research ropensci rstats workflow

Last synced: 23 Jun 2026

https://github.com/neutrons/multiphonon

multiphonon (getDOS)

Last synced: 23 Jun 2026

https://github.com/tlverse/origami

:game_die: :crystal_ball: Comprehensive Cross-Validation Engine

cross-validation machine-learning

Last synced: 23 Jun 2026

https://github.com/JoshKarpel/idesolver

A general-purpose numerical integro-differential equation solver

integro-differential-equations mathematics numerical-integration python

Last synced: 23 Jun 2026

https://github.com/csu-hmc/opty

A library for using direct collocation in the optimization of dynamic systems.

collocation optimal optimal-control optimization parameter-estimation python

Last synced: 23 Jun 2026

https://github.com/boisgera/bitstream

Binary Data for Humans

binary-data bitstream python

Last synced: 23 Jun 2026

https://gitlab.com/cerfacs/batman

Statistical analysis for expensive computer codes made easy.

CFD Gaussian process LES ensemble pod polynomial chaos python surrogate model uncertainty quantification uncertainty visualization

Last synced: 23 Jun 2026

https://github.com/onecodex/finch-rs

A genomic minhashing implementation in Rust

Last synced: 23 Jun 2026

https://github.com/openscm/pymagicc

Python wrapper for the simple climate model MAGICC

climate-model magicc-model python-wrapper

Last synced: 23 Jun 2026

https://github.com/expfactory/expfactory

software to generate a reproducible container with a battery of experiments

battery container experiment-factory experiments expfactory psychology reproducible singularity

Last synced: 23 Jun 2026

https://github.com/danilofreire/prisonbrief

An R package that returns tidy data from the World Prison Brief website.

data prison rstats world-prison-brief

Last synced: 23 Jun 2026

https://github.com/neuropsychology/psycho.R

An R package for experimental psychologists

apa apa6 bayesian correlation format interpretation mixed-models neuroscience psycho psychology r rstanarm statistics

Last synced: 23 Jun 2026

https://github.com/Molmed/checkQC

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

genomics illumina quality-control sequencing

Last synced: 23 Jun 2026

https://github.com/dartsim/dart

Research-focused C++23 physics engine for robotics, animation, and machine learning, with Python bindings

collision-detection computer-animation cpp23 dynamics gazebo inverse-kinematics kinematics lie-group mjcf multibody nanobind physics-engine python-bindings rigidbody robotics sdf simulation urdf

Last synced: 23 Jun 2026

https://github.com/CoreRobotics/CoreRobotics

Last synced: 23 Jun 2026

https://github.com/nterhoeven/reper

reper - Genome-wide identification, classification and quantification of repetitive elements without an assembled genome

Last synced: 23 Jun 2026

https://github.com/ropensci/weathercan

R package for downloading weather data from Environment and Climate Change Canada

environment-canada peer-reviewed r r-package rstats weather-data weather-downloader

Last synced: 23 Jun 2026

https://github.com/mathLab/PyDMD

mathLab mirror of Python Dynamic Mode Decomposition

Last synced: 23 Jun 2026

https://github.com/Edinburgh-Imaging/Masks2Metrics

M2M is a matlab code to compute volume, surface, thickness from 2 manually traced masks (binary data)

Last synced: 22 Jun 2026

https://github.com/PsyChiLin/EFAshiny

An User-Friendly Application for Exploratory Factor Analysis

data-exploration data-management data-visualization exploratory-factor-analysis factor-extraction factor-loadings ggplot2 r shiny

Last synced: 23 Jun 2026

https://github.com/usnistgov/ChebTools

C++ tools for working with Chebyshev expansion interpolants

Last synced: 23 Jun 2026

https://github.com/k3jph/phonics-in-r

Phonetic Spelling Algorithms in R

bsd-2-license linguistics metaphone nysiis phonetic-spelling-algorithms phonics record-linkage soundex text-processing

Last synced: 23 Jun 2026

https://github.com/jakobbossek/grapherator

A modular multi-step graph generator

combinatorial-optimization graph-generator minimum-spanning-tree multi-objective-optimization optimization

Last synced: 23 Jun 2026

https://github.com/mattpitkin/psrqpy

A python module to query the ATNF pulsar catalogue

atnf catalogue pulsar python

Last synced: 23 Jun 2026

https://github.com/gibbonCode/GIBBON

The Geometry and Image-Based Bioengineering add-On for MATLAB

finite-element-analysis geometry matlab segmentation tetgen visualization

Last synced: 23 Jun 2026

https://github.com/h5preserve/h5preserve

Thin wrapper around h5py and HDF5, inspired by camel

hdf5 python

Last synced: 23 Jun 2026

https://github.com/rreinecke/global-gradient-based-groundwater-model

The global gradient-based groundwater model G³M

Last synced: 23 Jun 2026

https://github.com/bmcage/odes/

The ODES scikit for ordinary differential and algebraic equations, an extension to scipy

Last synced: 23 Jun 2026

https://github.com/zedtaha/ivprobit-1.0

ivprobit fit an Instrumental variables probit model using the generalized least squares estimator

Last synced: 23 Jun 2026

https://github.com/ResidentMario/missingno

Missing data visualization module for Python.

data-analysis data-visualization missing-data pandas python

Last synced: 23 Jun 2026

https://github.com/pacificclimate/ClimDown

PCIC's Daily Climate Downscaling Library

Last synced: 22 Jun 2026

https://github.com/piermorel/gramm

Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.

data-visualization matlab plot statistics stats visualization

Last synced: 22 Jun 2026

https://github.com/KOALA-LMU/coalitions

Coalition probabilities in multi-party democracies

coalition-probabilities election-analysis elections r rstats

Last synced: 22 Jun 2026

https://github.com/PetoLau/TSrepr

TSrepr: R package for time series representations

data-analysis data-mining data-mining-algorithms data-science r r-package representation time-series time-series-analysis time-series-classification time-series-clustering time-series-data-mining time-series-representations

Last synced: 22 Jun 2026

https://github.com/WinVector/vtreat/

vtreat is a data frame processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner. Distributed under choice of GPL-2 or GPL-3 license.

categorical-variables machine-learning-algorithms nested-models prepare-data r

Last synced: 22 Jun 2026

https://github.com/JuliaDynamics/DynamicalSystems.jl

Award winning software library for nonlinear dynamics and nonlinear timeseries analysis

attractor chaos complexity delay-coordinates dynamical-systems entropy fractal-dimension hacktoberfest lyapunov mathematics nonlinear nonlinear-dynamics physics

Last synced: 22 Jun 2026

https://github.com/ropensci/hydroscoper

R interface to the Greek National Data Bank for Hydrometeorological Information

climate greece hydrology hydrometeorology hydroscope meteorological-data meteorological-stations peer-reviewed r r-package rstats tidy-data time-series water-resources

Last synced: 22 Jun 2026

https://github.com/ropensci/ijtiff

An R Package for general purpose TIFF file I/O which plays nice with ImageJ

image-manipulation imagej peer-reviewed r r-package rstats tiff-files tiff-images

Last synced: 22 Jun 2026

https://github.com/pynucastro/pynucastro

a python library for nuclear astrophysics

Last synced: 23 Jun 2026

https://github.com/NiaOrg/NiaPy

Python microframework for building nature-inspired algorithms. Official docs: https://niapy.org

hacktoberfest microframework nature-inspired-algorithms optimization-algorithms python swarm-intelligence

Last synced: 22 Jun 2026

https://github.com/poissonconsulting/checkr

An R package of assertive functions to check the properties of common R objects.

assertion checkr rstats

Last synced: 23 Jun 2026

https://github.com/ropensci/tokenizers

Fast, Consistent Tokenization of Natural Language Text

nlp peer-reviewed r r-package rstats text-mining tokenizer

Last synced: 22 Jun 2026

https://github.com/jronayne/PyTransport

A Python Package for the calculation of inflationary correlation functions.

Last synced: 23 Jun 2026

https://github.com/ropensci/USAboundaries

Historical and Contemporary Boundaries of the United States of America

digital-history history r r-package rstats spatial-data

Last synced: 22 Jun 2026

https://github.com/ellessenne/comorbidity

An R package for computing comorbidity scores.

comorbidity r rstats

Last synced: 23 Jun 2026

https://github.com/nunofachada/micompm

Multivariate independent comparison of observations

matlab matlab-toolbox multivariate multivariate-data multivariate-distributions multivariate-observations non-parametric octave octave-functions octave-scripts parametric-tests statistical-analysis statistical-data statistical-methods statistical-tests