JOSS: https://github.com/taxprofiler/taxpasta
bioinformatics classification metagenomic-classification metagenomics profiling python standardisation taxonomic-classifications taxonomic-profiling
Score: 10.755879558560052
Last synced: about 9 hours ago
JSON representation
Repository metadata:
TAXnomic Profile Aggregation and STAndardisation
- Host: GitHub
- URL: https://github.com/taxprofiler/taxpasta
- Owner: taxprofiler
- License: apache-2.0
- Created: 2022-06-03T17:06:44.000Z (almost 4 years ago)
- Default Branch: dev
- Last Pushed: 2025-11-18T12:19:23.000Z (5 months ago)
- Last Synced: 2026-03-29T04:56:46.505Z (4 days ago)
- Topics: bioinformatics, classification, metagenomic-classification, metagenomics, profiling, python, standardisation, taxonomic-classifications, taxonomic-profiling
- Language: Python
- Homepage: https://taxpasta.readthedocs.io/
- Size: 2.02 MB
- Stars: 42
- Watchers: 4
- Forks: 8
- Open Issues: 17
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md
- Citation: CITATION.cff
- Support: .github/SUPPORT.md
Owner metadata:
- Name: taxprofiler
- Login: taxprofiler
- Email:
- Kind: organization
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/104501065?v=4
- Repositories: 2
- Last Synced at: 2024-04-21T23:20:05.968Z
- Profile URL: https://github.com/taxprofiler
GitHub Events
Total
- Create event: 3
- Delete event: 1
- Fork event: 2
- Issue comment event: 17
- Issues event: 6
- Pull request event: 2
- Pull request review comment event: 4
- Pull request review event: 3
- Push event: 7
- Watch event: 7
- Total: 52
Last Year
- Create event: 2
- Delete event: 1
- Fork event: 2
- Issue comment event: 7
- Issues event: 5
- Pull request event: 1
- Pull request review comment event: 1
- Pull request review event: 1
- Push event: 3
- Watch event: 3
- Total: 26
Committers metadata
Last synced: 2 days ago
Total Commits: 618
Total Committers: 5
Avg Commits per committer: 123.6
Development Distribution Score (DDS): 0.152
Commits in past year: 16
Committers in past year: 1
Avg Commits per committer in past year: 16.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Moritz E. Beber | m****r@p****t | 524 |
| James Fellows Yates | j****3@g****m | 43 |
| Sofia Stamouli | s****i@s****e | 38 |
| maxibor | m****y@g****m | 12 |
| Tim Van Rillaer | t****r@h****m | 1 |
Issue and Pull Request metadata
Last synced: 4 days ago
Total issues: 68
Total pull requests: 85
Average time to close issues: about 1 month
Average time to close pull requests: 4 days
Total issue authors: 19
Total pull request authors: 5
Average comments per issue: 1.62
Average comments per pull request: 1.54
Merged pull request: 77
Bot issues: 0
Bot pull requests: 0
Past year issues: 5
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 4
Past year pull request authors: 1
Past year average comments per issue: 0.0
Past year average comments per pull request: 1.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- jfy133 (26)
- Midnighter (17)
- sofstam (4)
- maxibor (3)
- MajoroMask (3)
- alexhbnr (2)
- UmaJan (1)
- prototaxites (1)
- LilyAnderssonLee (1)
- Swindle98 (1)
- paulzierep (1)
- apcamargo (1)
- kdm9 (1)
- SannaAb (1)
- nvhphuc1206 (1)
Top Pull Request Authors
- Midnighter (51)
- jfy133 (21)
- sofstam (8)
- maxibor (4)
- xuanxu (1)
Top Issue Labels
- enhancement (19)
- bug (17)
- new taxonomic profiler (9)
- documentation (3)
- question (3)
- help wanted (1)
Top Pull Request Labels
- documentation (6)
- bug (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 156 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 13
- Total maintainers: 3
pypi.org: taxpasta
TAXonomic Profile Aggregation and STAndardisation
- Homepage: https://github.com/taxprofiler/taxpasta
- Documentation: https://taxpasta.readthedocs.io
- Licenses: Apache Software License
- Latest release: 0.7.0 (published almost 2 years ago)
- Last Synced: 2026-03-29T04:01:32.461Z (4 days ago)
- Versions: 13
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 156 Last month
-
Rankings:
- Dependent packages count: 6.633%
- Downloads: 10.687%
- Forks count: 13.564%
- Average: 15.524%
- Stargazers count: 16.126%
- Dependent repos count: 30.611%
- Maintainers (3)
Dependencies
- actions/checkout v3 composite
- actions/setup-python v3 composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
- softprops/action-gh-release v0.1 composite
- depinfo ~=2.2
- numpy ~=1.20
- pandas ~=1.4
- pandera ~=0.14
- taxopy ~=0.10
- typer ~=0.6