JOSS: https://github.com/Molmed/checkQC
genomics illumina quality-control sequencing
Score: 12.744318864872156
Last synced: about 6 hours ago
JSON representation
Repository metadata:
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
- Host: GitHub
- URL: https://github.com/Molmed/checkQC
- Owner: Molmed
- License: gpl-3.0
- Created: 2017-07-03T07:59:30.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2026-09-17T12:01:58.000Z (16 days ago)
- Last Synced: 2026-09-19T08:18:04.867Z (14 days ago)
- Topics: genomics, illumina, quality-control, sequencing
- Language: Python
- Homepage: http://checkqc.readthedocs.io/
- Size: 46.5 MB
- Stars: 30
- Watchers: 9
- Forks: 17
- Open Issues: 10
-
Metadata Files:
- Readme: README.md
- Contributing: docs/CONTRIBUTING.md
- License: LICENSE
Owner metadata:
- Name: Uppsala University, Department of Medical Sciences, Molecular Precision Medicine
- Login: Molmed
- Email:
- Kind: organization
- Description: Molecular Precision Medicine research group and the SNP&SEQ Technology Platform
- Website: https://www.uu.se/institution/medicinska-vetenskaper/forskning/forskargrupper/molekylar-precisionsmedicin
- Location: Sweden
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/3587866?v=4
- Repositories: 56
- Last Synced at: 2026-10-02T06:29:38.389Z
- Profile URL: https://github.com/Molmed
GitHub Events
Total
- Create event: 8
- Fork event: 1
- Issue comment event: 35
- Issues event: 6
- Pull request event: 22
- Pull request review comment event: 63
- Pull request review event: 77
- Push event: 13
- Release event: 3
- Watch event: 2
- Total: 230
Last Year
- Issue comment event: 3
- Pull request review comment event: 3
- Pull request review event: 2
- Push event: 2
- Total: 10
Committers metadata
Last synced: 1 day ago
Total Commits: 469
Total Committers: 15
Avg Commits per committer: 31.267
Development Distribution Score (DDS): 0.495
Commits in past year: 9
Committers in past year: 3
Avg Commits per committer in past year: 3.0
Development Distribution Score (DDS) in past year: 0.444
| Name | Commits | |
|---|---|---|
| Johan Dahlberg | j****g@m****e | 237 |
| Adrien Coulier | a****r@m****e | 81 |
| MatildaAslin | m****n@m****e | 75 |
| nelnk861 | n****e@u****e | 32 |
| monikaBrandt | m****t@m****e | 19 |
| Sara Ekberg | s****g@m****e | 8 |
| alvaannett | a****t@g****m | 4 |
| Stephan Lohse | s****e@m****e | 3 |
| Mariya Lysenkova | m****a@m****e | 2 |
| Johan Dahlberg | j****n@u****e | 2 |
| b97pla | p****n@m****e | 2 |
| Pontus Larsson | b****a | 1 |
| Luca Beltrame | l****e | 1 |
| Christian Brueffer | c****n@b****o | 1 |
| Sara Ekberg | s****8@N****e | 1 |
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 26
Total pull requests: 121
Average time to close issues: 4 months
Average time to close pull requests: about 1 month
Total issue authors: 12
Total pull request authors: 13
Average comments per issue: 1.96
Average comments per pull request: 2.02
Merged pull request: 115
Bot issues: 0
Bot pull requests: 1
Past year issues: 0
Past year pull requests: 4
Past year average time to close issues: N/A
Past year average time to close pull requests: about 16 hours
Past year issue authors: 0
Past year pull request authors: 2
Past year average comments per issue: 0
Past year average comments per pull request: 0.0
Past year merged pull request: 3
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- matrulda (9)
- johandahlberg (5)
- lbeltrame (2)
- avilella (2)
- marchoeppner (1)
- matthdsm (1)
- af8 (1)
- sgaleraalq (1)
- sarek928 (1)
- apeltzer (1)
- bwlang (1)
- maleasy (1)
Top Pull Request Authors
- johandahlberg (49)
- matrulda (22)
- Aratz (21)
- nkongenelly (10)
- monikaBrandt (6)
- sarek928 (4)
- alvaannett (2)
- lbeltrame (2)
- cbrueffer (1)
- dependabot[bot] (1)
- slohse (1)
- mariya (1)
- b97pla (1)
Top Issue Labels
- enhancement (5)
- bug (4)
- help wanted (2)
- known-issue (1)
- question (1)
Top Pull Request Labels
- hacktoberfest-accepted (3)
- dependencies (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 567 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 45
- Total maintainers: 3
pypi.org: checkqc
A simple program to parse Illumina NGS data and check it for quality criteria.
- Homepage: https://www.github.com/Molmed/checkQC
- Documentation: https://checkqc.readthedocs.io/
- Licenses: GPLv3
- Latest release: 4.1.2 (published 16 days ago)
- Last Synced: 2026-10-01T21:02:52.626Z (1 day ago)
- Versions: 45
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 567 Last month
-
Rankings:
- Downloads: 6.016%
- Forks count: 9.565%
- Dependent packages count: 10.112%
- Average: 11.989%
- Stargazers count: 12.681%
- Dependent repos count: 21.571%
- Maintainers (3)
Dependencies
- PyYAML >=6.0
- click *
- interop >=1.1.10
- sample_sheet *
- tornado *
- xmltodict *
- actions/checkout v4 composite
- actions/setup-python v4 composite
- codecov/codecov-action v3 composite
- python 3.10-slim build