JOSS: https://github.com/Molmed/checkQC
genomics illumina quality-control sequencing
Score: 11.146806062203495
Last synced: about 4 hours ago
JSON representation
Repository metadata:
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
- Host: GitHub
- URL: https://github.com/Molmed/checkQC
- Owner: Molmed
- License: gpl-3.0
- Created: 2017-07-03T07:59:30.000Z (almost 9 years ago)
- Default Branch: master
- Last Pushed: 2025-11-27T15:05:16.000Z (7 months ago)
- Last Synced: 2026-06-11T19:03:17.243Z (11 days ago)
- Topics: genomics, illumina, quality-control, sequencing
- Language: Python
- Homepage: http://checkqc.readthedocs.io/
- Size: 46.5 MB
- Stars: 29
- Watchers: 9
- Forks: 17
- Open Issues: 10
-
Metadata Files:
- Readme: README.md
- Contributing: docs/CONTRIBUTING.md
- License: LICENSE
Owner metadata:
- Name: Uppsala University, Department of Medical Sciences, Molecular Precision Medicine
- Login: Molmed
- Email:
- Kind: organization
- Description: Molecular Precision Medicine research group and the SNP&SEQ Technology Platform
- Website: www.molmed.se
- Location: Sweden
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/3587866?v=4
- Repositories: 56
- Last Synced at: 2024-03-27T01:18:36.475Z
- Profile URL: https://github.com/Molmed
GitHub Events
Total
- Create event: 8
- Fork event: 1
- Issue comment event: 35
- Issues event: 6
- Pull request event: 22
- Pull request review comment event: 63
- Pull request review event: 77
- Push event: 13
- Release event: 3
- Watch event: 2
- Total: 230
Last Year
- Create event: 2
- Issue comment event: 5
- Pull request review comment event: 13
- Pull request review event: 8
- Push event: 3
- Total: 31
Committers metadata
Last synced: 7 days ago
Total Commits: 466
Total Committers: 14
Avg Commits per committer: 33.286
Development Distribution Score (DDS): 0.491
Commits in past year: 20
Committers in past year: 2
Avg Commits per committer in past year: 10.0
Development Distribution Score (DDS) in past year: 0.15
| Name | Commits | |
|---|---|---|
| Johan Dahlberg | j****g@m****e | 237 |
| Adrien Coulier | a****r@m****e | 81 |
| MatildaAslin | m****n@m****e | 73 |
| nelnk861 | n****e@u****e | 32 |
| monikaBrandt | m****t@m****e | 19 |
| Sara Ekberg | s****g@m****e | 8 |
| alvaannett | a****t@g****m | 4 |
| Stephan Lohse | s****e@m****e | 3 |
| Mariya Lysenkova | m****a@m****e | 2 |
| Johan Dahlberg | j****n@u****e | 2 |
| b97pla | p****n@m****e | 2 |
| Pontus Larsson | b****a | 1 |
| Luca Beltrame | l****e | 1 |
| Christian Brueffer | c****n@b****o | 1 |
Issue and Pull Request metadata
Last synced: 5 months ago
Total issues: 26
Total pull requests: 117
Average time to close issues: 4 months
Average time to close pull requests: 26 days
Total issue authors: 12
Total pull request authors: 12
Average comments per issue: 1.96
Average comments per pull request: 2.09
Merged pull request: 113
Bot issues: 0
Bot pull requests: 0
Past year issues: 4
Past year pull requests: 25
Past year average time to close issues: 3 days
Past year average time to close pull requests: 16 days
Past year issue authors: 3
Past year pull request authors: 3
Past year average comments per issue: 0.75
Past year average comments per pull request: 2.88
Past year merged pull request: 23
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- matrulda (9)
- johandahlberg (5)
- lbeltrame (2)
- avilella (2)
- marchoeppner (1)
- matthdsm (1)
- af8 (1)
- sgaleraalq (1)
- sarek928 (1)
- apeltzer (1)
- bwlang (1)
- maleasy (1)
Top Pull Request Authors
- johandahlberg (49)
- Aratz (21)
- matrulda (19)
- nkongenelly (10)
- monikaBrandt (6)
- sarek928 (3)
- alvaannett (2)
- lbeltrame (2)
- cbrueffer (1)
- dependabot[bot] (1)
- slohse (1)
- mariya (1)
- b97pla (1)
Top Issue Labels
- enhancement (5)
- bug (4)
- help wanted (2)
- known-issue (1)
- question (1)
Top Pull Request Labels
- hacktoberfest-accepted (3)
- dependencies (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 123 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 43
- Total maintainers: 3
pypi.org: checkqc
A simple program to parse Illumina NGS data and check it for quality criteria.
- Homepage: https://www.github.com/Molmed/checkQC
- Documentation: https://checkqc.readthedocs.io/
- Licenses: GPLv3
- Latest release: 4.1.0 (published 12 months ago)
- Last Synced: 2026-06-15T21:03:52.229Z (7 days ago)
- Versions: 43
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 123 Last month
-
Rankings:
- Downloads: 6.016%
- Forks count: 9.565%
- Dependent packages count: 10.112%
- Average: 11.989%
- Stargazers count: 12.681%
- Dependent repos count: 21.571%
- Maintainers (3)
Dependencies
- PyYAML >=6.0
- click *
- interop >=1.1.10
- sample_sheet *
- tornado *
- xmltodict *
- actions/checkout v4 composite
- actions/setup-python v4 composite
- codecov/codecov-action v3 composite
- python 3.10-slim build