microViz

microbiome microbiome-analysis microbiota r rstats

Score: 5.703782474656201

Last synced: 1 day ago
JSON representation

Repository metadata:

R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

Host: GitHub
URL: https://github.com/david-barnett/microViz
Owner: david-barnett
License: gpl-3.0
Created: 2020-10-25T14:41:55.000Z (over 5 years ago)
Default Branch: main
Last Pushed: 2026-06-01T18:16:01.000Z (21 days ago)
Last Synced: 2026-06-07T15:03:25.487Z (15 days ago)
Topics: microbiome, microbiome-analysis, microbiota, r, rstats
Language: R
Homepage: https://david-barnett.github.io/microViz/
Size: 481 MB
Stars: 128
Watchers: 5
Forks: 13
Open Issues: 22
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- License: LICENSE.md
- Code of conduct: CODE_OF_CONDUCT.md

Owner metadata:

Name: David Barnett
Login: david-barnett
Email:
Kind: user
Description: PhD student. microbiome, Rstats, epidemiology, visualization.
Website:
Location: Maastricht
Twitter: _david_barnett_
Company:
Icon url: https://avatars.githubusercontent.com/u/33695702?u=d90bf05fcf38ffe7968e76cf18f5aa3a49f90e43&v=4
Repositories: 1
Last Synced at: 2023-03-05T08:09:29.626Z
Profile URL: https://github.com/david-barnett

GitHub Events

Total

Create event: 7
Delete event: 3
Fork event: 2
Issue comment event: 17
Issues event: 21
Pull request event: 6
Pull request review comment event: 1
Pull request review event: 1
Push event: 28
Release event: 2
Watch event: 13
Total: 101

Last Year

Create event: 3
Delete event: 1
Fork event: 1
Issue comment event: 7
Issues event: 9
Pull request event: 1
Pull request review comment event: 1
Pull request review event: 1
Push event: 19
Watch event: 4
Total: 47

Committers metadata

Last synced: 3 days ago

Total Commits: 896
Total Committers: 2
Avg Commits per committer: 448.0
Development Distribution Score (DDS): 0.001

Commits in past year: 32
Committers in past year: 2
Avg Commits per committer in past year: 16.0
Development Distribution Score (DDS) in past year: 0.031

Name	Email	Commits
David Barnett	c**l@h**k	895
Copilot	1****t	1

Issue and Pull Request metadata

Last synced: 9 days ago

Total issues: 100
Total pull requests: 43
Average time to close issues: 4 months
Average time to close pull requests: 8 days
Total issue authors: 56
Total pull request authors: 1
Average comments per issue: 1.37
Average comments per pull request: 0.86
Merged pull request: 31
Bot issues: 0
Bot pull requests: 0

Past year issues: 13
Past year pull requests: 4
Past year average time to close issues: 3 months
Past year average time to close pull requests: 6 days
Past year issue authors: 10
Past year pull request authors: 1
Past year average comments per issue: 1.23
Past year average comments per pull request: 1.75
Past year merged pull request: 4
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/david-barnett/microViz

Top Issue Authors

david-barnett (21)
Leran10 (8)
nr0cinu (4)
SilasK (4)
timz0605 (3)
hkaspersen (3)
Pablocl90 (2)
16svale (2)
scilexenko (2)
luigallucci (2)
BrigittevdG (2)
we32i225 (2)
jorondo1 (2)
wilhelmsjoland (1)
antagomir (1)

Top Pull Request Authors

david-barnett (43)

Top Issue Labels

enhancement (17)
bug (16)
documentation (10)
question (3)
informative errors needed (3)
duplicate (1)

Top Pull Request Labels

enhancement (1)
bug (1)

Dependencies

.github/workflows/R-CMD-check.yaml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/docker-publish-latest.yml actions

actions/checkout v3 composite
docker/build-push-action v2 composite
docker/login-action v1 composite
docker/setup-buildx-action v1 composite

.github/workflows/docker-publish-release.yml actions

actions/checkout v3 composite
docker/build-push-action v2 composite
docker/login-action v1 composite
docker/metadata-action v3 composite
docker/setup-buildx-action v1 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action 4.1.4 composite
actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/test-coverage.yaml actions

actions/checkout v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

DESCRIPTION cran

R >= 3.5.0 depends
ComplexHeatmap >= 2.0.0 imports
broom * imports
circlize * imports
colorspace * imports
cowplot * imports
dplyr >= 1.0.0 imports
ggiraph * imports
ggplot2 * imports
microbiome * imports
phyloseq * imports
purrr * imports
rlang >= 1.0.0 imports
scales * imports
seriation * imports
shiny >= 1.5.0 imports
tibble * imports
tidyr * imports
vegan * imports
DT * suggests
GUniFrac * suggests
corncob >= 0.2.1 suggests
devtools * suggests
forcats * suggests
future * suggests
future.apply * suggests
ggraph >= 2.0.0 suggests
ggrepel * suggests
ggside * suggests
ggtext * suggests
grDevices * suggests
knitr * suggests
methods * suggests
patchwork >= 1.0.0 suggests
rmarkdown * suggests
shinytest2 * suggests
skimr * suggests
stringr * suggests
testthat * suggests
tidygraph * suggests
vdiffr * suggests
viridisLite * suggests

docker/latest/Dockerfile docker

rocker/verse latest build

docker/release/Dockerfile docker

rocker/verse latest build

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