JOSS: https://github.com/milnus/Magphi
annotations bacterial-genomes insertion-sites mobile-genetic-elements prokaryotic-genomes
Score: 8.31238059678675
Last synced: about 19 hours ago
JSON representation
Repository metadata:
Tool intended to pull out sequences and annotations between insertion sites specified by the user.
- Host: GitHub
- URL: https://github.com/milnus/Magphi
- Owner: milnus
- License: mit
- Created: 2021-03-17T00:15:12.000Z (over 5 years ago)
- Default Branch: main
- Last Pushed: 2026-04-10T06:44:19.000Z (2 months ago)
- Last Synced: 2026-05-23T07:03:34.642Z (about 1 month ago)
- Topics: annotations, bacterial-genomes, insertion-sites, mobile-genetic-elements, prokaryotic-genomes
- Language: Python
- Homepage:
- Size: 15.8 MB
- Stars: 13
- Watchers: 1
- Forks: 3
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata:
- Name: Magnus G. Jespersen
- Login: milnus
- Email:
- Kind: user
- Description: PhD student at The University of Melbourne | Davies Lab | Microbial genomics | Streptococcus Pyogenes | Multi omics analysis
- Website:
- Location: Melbourne, Australia
- Twitter: magnus_gj
- Company:
- Icon url: https://avatars.githubusercontent.com/u/44769523?u=41720c6a26804e9805eb9b8179014963ec01f61f&v=4
- Repositories: 3
- Last Synced at: 2023-03-06T03:43:18.756Z
- Profile URL: https://github.com/milnus
GitHub Events
Total
- Push event: 5
- Watch event: 1
- Total: 6
Last Year
- Push event: 5
- Total: 5
Committers metadata
Last synced: 10 days ago
Total Commits: 286
Total Committers: 3
Avg Commits per committer: 95.333
Development Distribution Score (DDS): 0.035
Commits in past year: 1
Committers in past year: 1
Avg Commits per committer in past year: 1.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| milnus | 4****s | 276 |
| Andrew Hayes | 2****t | 9 |
| Arfon Smith | a****n | 1 |
Issue and Pull Request metadata
Last synced: 2 months ago
Total issues: 13
Total pull requests: 14
Average time to close issues: 2 months
Average time to close pull requests: about 15 hours
Total issue authors: 5
Total pull request authors: 3
Average comments per issue: 1.31
Average comments per pull request: 0.0
Merged pull request: 14
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: 5 minutes
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- gtonkinhill (6)
- milnus (4)
- Oelsakha (1)
- ayaanhossain (1)
- BiologicalScientist (1)
Top Pull Request Authors
- milnus (11)
- BiologicalScientist (2)
- arfon (1)
Top Issue Labels
- enhancement (3)
- bug (2)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 95 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 8
- Total maintainers: 1
pypi.org: magphi
A bioinformatics tool allowing for examnination and extraction of genomic features using seed sequences.
- Homepage: https://github.com/milnus/Magphi
- Documentation: https://magphi.readthedocs.io/
- Licenses: MIT license
- Latest release: 2.1.0 (published 2 months ago)
- Last Synced: 2026-06-12T17:03:35.655Z (10 days ago)
- Versions: 8
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 95 Last month
-
Rankings:
- Dependent packages count: 10.095%
- Stargazers count: 16.018%
- Forks count: 16.831%
- Dependent repos count: 21.615%
- Average: 23.31%
- Downloads: 51.99%
- Maintainers (1)
Dependencies
- actions/checkout v2 composite
- actions/upload-artifact v1 composite
- openjournals/openjournals-draft-action master composite
- actions/checkout v2 composite
- actions/checkout main composite
- actions/setup-python v1 composite
- pypa/gh-action-pypi-publish master composite
- actions/checkout v2 composite
- python 3.9.7-buster build
- biopython >=1.79 development
- pybedtools ==0.8.2 development
- pylint * development
- biopython ==1.79
- pybedtools ==0.8.2
- pylint *
- biopython >=1.79
- pybedtools ==0.8.2