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JOSS: https://github.com/milnus/Magphi

annotations bacterial-genomes insertion-sites mobile-genetic-elements prokaryotic-genomes

Score: 8.31238059678675

Last synced: about 19 hours ago
JSON representation

Repository metadata:

Tool intended to pull out sequences and annotations between insertion sites specified by the user.


Owner metadata:


GitHub Events

Total
Last Year

Committers metadata

Last synced: 10 days ago

Total Commits: 286
Total Committers: 3
Avg Commits per committer: 95.333
Development Distribution Score (DDS): 0.035

Commits in past year: 1
Committers in past year: 1
Avg Commits per committer in past year: 1.0
Development Distribution Score (DDS) in past year: 0.0

Name Email Commits
milnus 4****s 276
Andrew Hayes 2****t 9
Arfon Smith a****n 1

Issue and Pull Request metadata

Last synced: 2 months ago

Total issues: 13
Total pull requests: 14
Average time to close issues: 2 months
Average time to close pull requests: about 15 hours
Total issue authors: 5
Total pull request authors: 3
Average comments per issue: 1.31
Average comments per pull request: 0.0
Merged pull request: 14
Bot issues: 0
Bot pull requests: 0

Past year issues: 0
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: 5 minutes
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/milnus/Magphi

Top Issue Authors

  • gtonkinhill (6)
  • milnus (4)
  • Oelsakha (1)
  • ayaanhossain (1)
  • BiologicalScientist (1)

Top Pull Request Authors

  • milnus (11)
  • BiologicalScientist (2)
  • arfon (1)

Top Issue Labels

  • enhancement (3)
  • bug (2)

Top Pull Request Labels


Package metadata

pypi.org: magphi

A bioinformatics tool allowing for examnination and extraction of genomic features using seed sequences.

  • Homepage: https://github.com/milnus/Magphi
  • Documentation: https://magphi.readthedocs.io/
  • Licenses: MIT license
  • Latest release: 2.1.0 (published 2 months ago)
  • Last Synced: 2026-06-12T17:03:35.655Z (10 days ago)
  • Versions: 8
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 95 Last month
  • Rankings:
    • Dependent packages count: 10.095%
    • Stargazers count: 16.018%
    • Forks count: 16.831%
    • Dependent repos count: 21.615%
    • Average: 23.31%
    • Downloads: 51.99%
  • Maintainers (1)

Dependencies

.github/workflows/Compile_paper.yml actions
  • actions/checkout v2 composite
  • actions/upload-artifact v1 composite
  • openjournals/openjournals-draft-action master composite
.github/workflows/Mapghi_test_suite.yml actions
  • actions/checkout v2 composite
.github/workflows/build_n_publish.yml actions
  • actions/checkout main composite
  • actions/setup-python v1 composite
  • pypa/gh-action-pypi-publish master composite
.github/workflows/test.yml actions
  • actions/checkout v2 composite
Dockerfile docker
  • python 3.9.7-buster build
requirements-dev.txt pypi
  • biopython >=1.79 development
  • pybedtools ==0.8.2 development
  • pylint * development
requirements.txt pypi
  • biopython ==1.79
  • pybedtools ==0.8.2
  • pylint *
setup.py pypi
  • biopython >=1.79
  • pybedtools ==0.8.2