rTASSEL

genomic-prediction gwas linkage-disequilibrium

Score: 6.016157159698354

Last synced: about 11 hours ago
JSON representation

Repository metadata:

R front-end for TASSEL 5

Host: GitHub
URL: https://github.com/maize-genetics/rTASSEL
Owner: maize-genetics
License: apache-2.0
Created: 2019-07-24T23:51:57.000Z (about 7 years ago)
Default Branch: master
Last Pushed: 2026-08-10T20:52:32.000Z (12 days ago)
Last Synced: 2026-08-15T01:07:01.499Z (8 days ago)
Topics: genomic-prediction, gwas, linkage-disequilibrium
Language: R
Homepage: https://rtassel.maizegenetics.net
Size: 242 MB
Stars: 34
Watchers: 2
Forks: 9
Open Issues: 7
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md

Owner metadata:

Name: Maize Genetics
Login: maize-genetics
Email:
Kind: organization
Description:
Website: https://www.maizegenetics.net/
Location: Cornell University, Ithaca, New York
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/53280986?v=4
Repositories: 3
Last Synced at: 2023-03-05T06:27:35.916Z
Profile URL: https://github.com/maize-genetics

GitHub Events

Total

Create event: 7
Delete event: 5
Issue comment event: 9
Issues event: 8
Pull request event: 3
Pull request review comment event: 6
Pull request review event: 6
Push event: 50
Release event: 1
Watch event: 3
Total: 98

Last Year

Create event: 4
Delete event: 2
Issue comment event: 6
Issues event: 4
Pull request event: 1
Pull request review comment event: 2
Pull request review event: 1
Push event: 28
Total: 48

Committers metadata

Last synced: 3 days ago

Total Commits: 744
Total Committers: 10
Avg Commits per committer: 74.4
Development Distribution Score (DDS): 0.144

Commits in past year: 69
Committers in past year: 2
Avg Commits per committer in past year: 34.5
Development Distribution Score (DDS) in past year: 0.014

Name	Email	Commits
Brandon	b**r@g**m	637
Edward Buckler	e**3@c**u	45
Unknown	a**s@g**m	28
Lynn Johnson	l**r@g**m	13
Sarah Jensen	s**5@c**u	6
ter56	t**6@c**u	4
Travis Wrightsman	t**3@c**u	4
Terry Casstevens	t**6@c**u	4
Joe Gage	j**4@c**u	2
github-actions[bot]	4****]	1

Issue and Pull Request metadata

Last synced: 1 day ago

Total issues: 21
Total pull requests: 11
Average time to close issues: about 1 month
Average time to close pull requests: 1 day
Total issue authors: 9
Total pull request authors: 2
Average comments per issue: 1.67
Average comments per pull request: 0.82
Merged pull request: 11
Bot issues: 0
Bot pull requests: 0

Past year issues: 8
Past year pull requests: 6
Past year average time to close issues: about 1 month
Past year average time to close pull requests: 2 days
Past year issue authors: 1
Past year pull request authors: 1
Past year average comments per issue: 2.38
Past year average comments per pull request: 1.0
Past year merged pull request: 6
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/maize-genetics/rTASSEL

Top Issue Authors

KewinOgink (8)
tomsing1 (4)
amelia-mendez (2)
tkchafin (2)
hidvegin (1)
SabinaMT (1)
snowformatics (1)
BB1464 (1)
robolvhez (1)

Top Pull Request Authors

btmonier (9)
danielskatz (2)

Top Issue Labels

enhancement (3)
bug (3)
documentation (1)

Top Pull Request Labels

Dependencies

DESCRIPTION cran

GenomicRanges * imports
IRanges * imports
S4Vectors * imports
SummarizedExperiment * imports
ape * imports
ggplot2 * imports
methods * imports
rJava * imports
rlang * imports
BiocStyle * suggests
knitr * suggests
magrittr * suggests
rmarkdown * suggests
testthat * suggests

.github/workflows/ci.yaml actions

./.github/actions/setup-tassel * composite
JamesIves/github-pages-deploy-action v4.4.1 composite
actions/checkout v4 composite
actions/upload-artifact v4 composite
codecov/codecov-action v5 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/release.yaml actions

actions/checkout v4 composite

.github/actions/setup-tassel/action.yaml actions

actions/cache v4 composite
actions/setup-java v4 composite

.github/workflows/check-devel.yaml actions

./.github/actions/setup-tassel * composite
actions/checkout v4 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

docker/Dockerfile docker

rocker/tidyverse 4.5 build

ecosyste.ms

Data

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Experiments

Summary