JOSS: https://github.com/scverse/anndata
anndata bioinformatics data-science machine-learning scanpy scverse transcriptomics
Score: 25.389523883312325
Last synced: about 8 hours ago
JSON representation
Repository metadata:
Annotated data.
- Host: GitHub
- URL: https://github.com/scverse/anndata
- Owner: scverse
- License: bsd-3-clause
- Created: 2017-08-11T14:10:06.000Z (about 9 years ago)
- Default Branch: main
- Last Pushed: 2026-08-05T11:08:32.000Z (8 days ago)
- Last Synced: 2026-08-05T22:42:59.571Z (7 days ago)
- Topics: anndata, bioinformatics, data-science, machine-learning, scanpy, scverse, transcriptomics
- Language: Python
- Homepage: http://anndata.scverse.org
- Size: 8.48 MB
- Stars: 763
- Watchers: 13
- Forks: 206
- Open Issues: 266
-
Metadata Files:
- Readme: README.md
- Contributing: docs/contributing.md
- License: LICENSE
Owner metadata:
- Name: scverse
- Login: scverse
- Email:
- Kind: organization
- Description: Foundational tools for omics data in the life sciences
- Website: https://scverse.org
- Location:
- Twitter: scverse_team
- Company:
- Icon url: https://avatars.githubusercontent.com/u/95305807?v=4
- Repositories: 28
- Last Synced at: 2023-03-04T04:09:21.566Z
- Profile URL: https://github.com/scverse
GitHub Events
Total
- Commit comment event: 1
- Create event: 183
- Delete event: 153
- Fork event: 17
- Issue comment event: 636
- Issues event: 105
- Member event: 1
- Pull request event: 479
- Pull request review comment event: 426
- Pull request review event: 442
- Push event: 927
- Release event: 9
- Watch event: 66
- Total: 3445
Last Year
- Commit comment event: 1
- Create event: 184
- Delete event: 155
- Fork event: 18
- Issue comment event: 639
- Issues event: 107
- Member event: 1
- Pull request event: 482
- Pull request review comment event: 428
- Pull request review event: 444
- Push event: 943
- Release event: 9
- Watch event: 66
- Total: 3477
Committers metadata
Last synced: 1 day ago
Total Commits: 1,752
Total Committers: 63
Avg Commits per committer: 27.81
Development Distribution Score (DDS): 0.755
Commits in past year: 249
Committers in past year: 18
Avg Commits per committer in past year: 13.833
Development Distribution Score (DDS) in past year: 0.647
| Name | Commits | |
|---|---|---|
| Isaac Virshup | i****p@g****m | 430 |
| Philipp A | f****p@w****e | 399 |
| falexwolf | f****f@g****e | 283 |
| Ilan Gold | i****d@g****m | 233 |
| pre-commit-ci[bot] | 6****] | 144 |
| Koncopd | k****d@g****m | 59 |
| dependabot[bot] | 4****] | 26 |
| Lumberbot (aka Jack) | 3****e | 25 |
| Robrecht Cannoodt | r****d@g****m | 13 |
| Gokcen Eraslan | g****n@b****g | 9 |
| Lukas Heumos | l****s@p****t | 9 |
| Gökçen Eraslan | g****n@g****m | 8 |
| ilia-kats | i****s@g****t | 8 |
| Severin Dicks | 3****7 | 8 |
| Selman Özleyen | 3****n | 8 |
| Volker Bergen | 3****n | 7 |
| Gregor Sturm | m****l@g****e | 6 |
| Tom White | t****e@g****m | 6 |
| Michal Klein | m****n@t****m | 5 |
| Matt Weiden | 5****n | 4 |
| Eljas Roellin | 6****l | 4 |
| Dominik J. Otto | d****o@g****m | 4 |
| dawe | c****e@g****m | 3 |
| Ryan Williams | r****s@g****m | 3 |
| Chris Rands | c****0@h****m | 2 |
| Jesko Wagner | 3****r | 2 |
| Joshua Gould | j****d | 2 |
| Selman Özleyen | 3****n | 2 |
| Stephen Fleming | s****g | 2 |
| Wouter-Michiel Vierdag | w****v@h****m | 2 |
| and 33 more... | ||
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 425
Total pull requests: 1,530
Average time to close issues: 9 months
Average time to close pull requests: 26 days
Total issue authors: 181
Total pull request authors: 61
Average comments per issue: 3.21
Average comments per pull request: 1.68
Merged pull request: 1,222
Bot issues: 0
Bot pull requests: 177
Past year issues: 55
Past year pull requests: 188
Past year average time to close issues: 20 days
Past year average time to close pull requests: 2 days
Past year issue authors: 31
Past year pull request authors: 26
Past year average comments per issue: 1.8
Past year average comments per pull request: 1.68
Past year merged pull request: 123
Past year bot issues: 0
Past year bot pull requests: 42
Top Issue Authors
- ilan-gold (57)
- ivirshup (56)
- flying-sheep (32)
- WeilerP (10)
- grst (9)
- joshua-gould (7)
- LucaMarconato (6)
- Zethson (6)
- meeseeksmachine (5)
- Hrovatin (5)
- alam-shahul (4)
- sjfleming (4)
- gtca (4)
- Rafael-Silva-Oliveira (4)
- lazappi (4)
Top Pull Request Authors
- ilan-gold (408)
- meeseeksmachine (378)
- flying-sheep (288)
- pre-commit-ci[bot] (157)
- ivirshup (125)
- dependabot[bot] (20)
- Intron7 (16)
- falexwolf (11)
- ilia-kats (11)
- Zethson (7)
- amalia-k510 (6)
- syelman (6)
- eroell (5)
- grst (5)
- joshua-gould (5)
Top Issue Labels
- Bug 🐛 (144)
- enhancement (143)
- topic: io (51)
- stale (50)
- Triage 🩺 (41)
- Needs info❔ (29)
- topic: api (26)
- topic: backed (20)
- dev process (20)
- docs (18)
- backend: zarr (17)
- type: sparse 🫥 (15)
- performance 🐌 (14)
- topic: indexing (14)
- topic: combining (14)
- upstream (13)
- pinned (12)
- question (11)
- type: dask array (11)
- topic: views 👀 (10)
- type: dataframe 🧮 (10)
- skip-gpu-ci (8)
- topic: gpu (8)
- backend: hdf5 (7)
- testing (6)
- topic: cloud ☁️ (6)
- topic: compatibility (5)
- breaking change ‼️ (4)
- good first issue (3)
- type: awkward array 😐 (3)
Top Pull Request Labels
- skip-gpu-ci (1,069)
- dev process (267)
- run-gpu-ci (132)
- Bug 🐛 (66)
- no milestone (62)
- docs (58)
- topic: backed (34)
- benchmark (29)
- type: sparse 🫥 (27)
- backend: zarr (24)
- topic: api (17)
- enhancement (17)
- topic: combining (17)
- performance 🐌 (16)
- backend: hdf5 (16)
- topic: io (13)
- topic: gpu (11)
- type: dask array (10)
- type: awkward array 😐 (9)
- needs retroactive review (9)
- testing (8)
- type: dataframe 🧮 (7)
- topic: indexing (6)
- topic: views 👀 (6)
- upstream (4)
- breaking change ‼️ (2)
- topic: exported functions (2)
- DON’T MERGE (2)
- topic: error messages 🤬 (1)
- help wanted (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 1,602,314 last-month
- Total docker downloads: 36,483
- Total dependent packages: 389
- Total dependent repositories: 467
- Total versions: 104
- Total maintainers: 2
pypi.org: anndata
Annotated data.
- Homepage:
- Documentation: https://anndata.readthedocs.io/
- Licenses: bsd-3-clause
- Latest release: 0.12.6 (published 9 months ago)
- Last Synced: 2026-06-03T14:49:58.453Z (2 months ago)
- Versions: 104
- Dependent Packages: 389
- Dependent Repositories: 467
- Downloads: 1,602,314 Last month
- Docker Downloads: 36,483
-
Rankings:
- Dependent packages count: 0.085%
- Dependent repos count: 0.667%
- Downloads: 0.949%
- Docker downloads count: 1.353%
- Average: 1.685%
- Stargazers count: 2.937%
- Forks count: 4.116%
- Maintainers (2)
Dependencies
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- pypa/gh-action-pypi-publish release/v1 composite
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- h5py >=3
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- numpy >=1.16.5
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