JOSS: https://github.com/scverse/anndata
anndata bioinformatics data-science machine-learning scanpy scverse transcriptomics
Score: 25.312726312381486
Last synced: 1 day ago
JSON representation
Repository metadata:
Annotated data.
- Host: GitHub
- URL: https://github.com/scverse/anndata
- Owner: scverse
- License: bsd-3-clause
- Created: 2017-08-11T14:10:06.000Z (over 9 years ago)
- Default Branch: main
- Last Pushed: 2026-11-11T01:45:00.000Z (3 days ago)
- Last Synced: 2026-11-11T14:49:27.035Z (3 days ago)
- Topics: anndata, bioinformatics, data-science, machine-learning, scanpy, scverse, transcriptomics
- Language: Python
- Homepage: http://anndata.scverse.org
- Size: 10.7 MB
- Stars: 785
- Watchers: 13
- Forks: 223
- Open Issues: 285
-
Metadata Files:
- Readme: README.md
- Contributing: docs/contributing.md
- License: LICENSE
Owner metadata:
- Name: scverse
- Login: scverse
- Email:
- Kind: organization
- Description: Foundational tools for omics data in the life sciences
- Website: https://scverse.org
- Location:
- Twitter: scverse_team
- Company:
- Icon url: https://avatars.githubusercontent.com/u/95305807?v=4
- Repositories: 106
- Last Synced at: 2026-11-07T19:07:35.387Z
- Profile URL: https://github.com/scverse
GitHub Events
Total
- Commit comment event: 1
- Create event: 280
- Delete event: 252
- Fork event: 21
- Issue comment event: 829
- Issues event: 307
- Member event: 1
- Pull request event: 688
- Pull request review comment event: 517
- Pull request review event: 520
- Push event: 1399
- Release event: 11
- Watch event: 82
- Total: 4908
Last Year
- Create event: 75
- Delete event: 71
- Fork event: 3
- Issue comment event: 133
- Issues event: 88
- Pull request event: 138
- Pull request review comment event: 72
- Pull request review event: 56
- Push event: 338
- Release event: 2
- Watch event: 10
- Total: 986
Committers metadata
Last synced: 3 days ago
Total Commits: 1,818
Total Committers: 69
Avg Commits per committer: 26.348
Development Distribution Score (DDS): 0.763
Commits in past year: 253
Committers in past year: 25
Avg Commits per committer in past year: 10.12
Development Distribution Score (DDS) in past year: 0.704
| Name | Commits | |
|---|---|---|
| Isaac Virshup | i****p@g****m | 430 |
| Philipp A | f****p@w****e | 423 |
| falexwolf | f****f@g****e | 283 |
| Ilan Gold | i****d@g****m | 242 |
| pre-commit-ci[bot] | 6****] | 144 |
| Koncopd | k****d@g****m | 59 |
| dependabot[bot] | 4****] | 45 |
| Lumberbot (aka Jack) | 3****e | 26 |
| Robrecht Cannoodt | r****d@g****m | 13 |
| Lukas Heumos | l****s@p****t | 11 |
| Gokcen Eraslan | g****n@b****g | 9 |
| Severin Dicks | 3****7 | 9 |
| Selman Özleyen | 3****n | 8 |
| ilia-kats | i****s@g****t | 8 |
| Gökçen Eraslan | g****n@g****m | 8 |
| Volker Bergen | 3****n | 7 |
| Tom White | t****e@g****m | 6 |
| Gregor Sturm | m****l@g****e | 6 |
| Michal Klein | m****n@t****m | 5 |
| Joshua Gould | j****d | 5 |
| Dominik J. Otto | d****o@g****m | 4 |
| Eljas Roellin | 6****l | 4 |
| Matt Weiden | 5****n | 4 |
| dawe | c****e@g****m | 3 |
| Ryan Williams | r****s@g****m | 3 |
| michalk8 | 4****8 | 2 |
| huidongchen | g****e@g****m | 2 |
| amalia-k510 | k****l@g****m | 2 |
| Wouter-Michiel Vierdag | w****v@h****m | 2 |
| Stephen Fleming | s****g | 2 |
| and 39 more... | ||
Issue and Pull Request metadata
Last synced: 3 days ago
Total issues: 911
Total pull requests: 2,332
Average time to close issues: 9 months
Average time to close pull requests: 25 days
Total issue authors: 374
Total pull request authors: 124
Average comments per issue: 3.92
Average comments per pull request: 1.89
Merged pull request: 1,931
Bot issues: 0
Bot pull requests: 257
Past year issues: 87
Past year pull requests: 427
Past year average time to close issues: 16 days
Past year average time to close pull requests: 6 days
Past year issue authors: 37
Past year pull request authors: 51
Past year average comments per issue: 2.76
Past year average comments per pull request: 1.87
Past year merged pull request: 356
Past year bot issues: 0
Past year bot pull requests: 73
Top Issue Authors
- ivirshup (121)
- ilan-gold (65)
- flying-sheep (61)
- joshua-gould (30)
- gokceneraslan (16)
- grst (15)
- WeilerP (14)
- falexwolf (12)
- Hrovatin (10)
- sjfleming (9)
- bkmartinjr (9)
- Koncopd (8)
- Zethson (8)
- katosh (8)
- adamgayoso (7)
Top Pull Request Authors
- ilan-gold (519)
- meeseeksmachine (476)
- flying-sheep (457)
- ivirshup (280)
- pre-commit-ci[bot] (202)
- dependabot[bot] (54)
- falexwolf (31)
- Koncopd (23)
- Intron7 (18)
- selmanozleyen (17)
- ilia-kats (15)
- Zethson (14)
- joshua-gould (10)
- katosh (9)
- grst (9)
Top Issue Labels
- stale (116)
- topic: io (98)
- Needs info❔ (63)
- question (52)
- topic: api (40)
- docs (35)
- topic: backed (34)
- topic: combining (29)
- backend: zarr (27)
- dev process (25)
- topic: indexing (24)
- performance 🐌 (24)
- upstream (22)
- backend: hdf5 (19)
- pinned (19)
- type: sparse 🫥 (18)
- topic: views 👀 (17)
- type: dataframe 🧮 (16)
- type: dask array (14)
- testing (12)
- duplicate (12)
- topic: cloud ☁️ (10)
- topic: compatibility (9)
- topic: gpu (8)
- skip-gpu-ci (8)
- good first issue (7)
- Triage 🩺 (6)
- type: awkward array 😐 (4)
- breaking change ‼️ (4)
- help wanted 🙏 (4)
Top Pull Request Labels
- skip-gpu-ci (1,373)
- dev process (279)
- run-gpu-ci (137)
- no milestone (122)
- docs (74)
- benchmark (51)
- topic: backed (36)
- type: sparse 🫥 (31)
- backend: zarr (27)
- Bug 🐛 (25)
- backend: hdf5 (22)
- performance 🐌 (21)
- topic: combining (19)
- topic: io (18)
- topic: api (17)
- type: dask array (11)
- topic: gpu (11)
- type: awkward array 😐 (10)
- needs retroactive review (9)
- type: dataframe 🧮 (9)
- testing (8)
- topic: views 👀 (7)
- topic: indexing (6)
- enhancement (6)
- upstream (4)
- topic: exported functions (2)
- type: xarray 🧊 (2)
- breaking change ‼️ (2)
- help wanted 🙏 (1)
- topic: compatibility (1)
Package metadata
- Total packages: 2
-
Total downloads:
- pypi: 1,295,928 last-month
- Total docker downloads: 36,483
- Total dependent packages: 389 (may contain duplicates)
- Total dependent repositories: 467 (may contain duplicates)
- Total versions: 126
- Total maintainers: 2
pypi.org: anndata
Annotated data.
- Homepage:
- Documentation: https://anndata.readthedocs.io/
- Licenses: BSD-3-Clause
- Latest release: 0.13.4 (published about 2 months ago)
- Last Synced: 2026-11-11T14:46:41.171Z (3 days ago)
- Versions: 125
- Dependent Packages: 389
- Dependent Repositories: 467
- Downloads: 1,295,928 Last month
- Docker Downloads: 36,483
-
Rankings:
- Dependent packages count: 0.085%
- Dependent repos count: 0.667%
- Downloads: 0.949%
- Docker downloads count: 1.353%
- Average: 1.685%
- Stargazers count: 2.937%
- Forks count: 4.116%
- Maintainers (2)
proxy.golang.org: github.com/scverse/anndata
- Homepage:
- Status: removed
- Documentation: https://pkg.go.dev/github.com/scverse/anndata#section-documentation
- Licenses: bsd-3-clause
- Latest release: v0.0.0-20260812070816-71dd36173496 (published 3 months ago)
- Last Synced: 2026-11-11T14:46:41.385Z (3 days ago)
- Versions: 1
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 4.482%
- Average: 4.633%
- Dependent repos count: 4.783%
Dependencies
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