JOSS: https://github.com/Juke34/AliNe
bbmap bowtie bowtie2 bwa bwamem2 dragmap graphmap2 hisat2 kallisto last minimap2 nextflow ngmlr novoalign nucmer salmon star starlong sublong subread
Score: 4.189654742026426
Last synced: about 6 hours ago
JSON representation
Repository metadata:
Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease
- Host: GitHub
- URL: https://github.com/Juke34/AliNe
- Owner: Juke34
- License: mit
- Created: 2023-07-03T12:06:34.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2026-06-02T12:58:21.000Z (3 months ago)
- Last Synced: 2026-08-09T21:23:12.657Z (12 days ago)
- Topics: bbmap, bowtie, bowtie2, bwa, bwamem2, dragmap, graphmap2, hisat2, kallisto, last, minimap2, nextflow, ngmlr, novoalign, nucmer, salmon, star, starlong, sublong, subread
- Language: Nextflow
- Homepage:
- Size: 13.4 MB
- Stars: 22
- Watchers: 3
- Forks: 3
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Citation: CITATION.cff
Owner metadata:
- Name: Jacques Dainat
- Login: Juke34
- Email:
- Kind: user
- Description: Bioinformatician at IRD
- Website: https://www.researchgate.net/profile/Jacques-Dainat-2
- Location: Montpellier, France
- Twitter: JacquesDainat
- Company: IRD
- Icon url: https://avatars.githubusercontent.com/u/6769395?u=2e4ccaf31b2547ba8ce115ead47e35403812cc5e&v=4
- Repositories: 2
- Last Synced at: 2023-03-05T17:13:18.130Z
- Profile URL: https://github.com/Juke34
GitHub Events
Total
- Create event: 29
- Delete event: 25
- Fork event: 3
- Issue comment event: 31
- Issues event: 32
- Pull request event: 43
- Pull request review event: 3
- Push event: 104
- Release event: 14
- Watch event: 17
- Total: 301
Last Year
- Create event: 1
- Delete event: 7
- Issue comment event: 1
- Issues event: 2
- Pull request event: 4
- Push event: 20
- Release event: 1
- Total: 36
Committers metadata
Last synced: 2 days ago
Total Commits: 226
Total Committers: 3
Avg Commits per committer: 75.333
Development Distribution Score (DDS): 0.022
Commits in past year: 52
Committers in past year: 1
Avg Commits per committer in past year: 52.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Jacques Dainat | j****t@i****r | 221 |
| Julia | 2****a | 3 |
| Robrecht Cannoodt | r****d@g****m | 2 |
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 18
Total pull requests: 48
Average time to close issues: 9 days
Average time to close pull requests: about 11 hours
Total issue authors: 5
Total pull request authors: 3
Average comments per issue: 1.22
Average comments per pull request: 0.27
Merged pull request: 44
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 6
Past year average time to close issues: about 20 hours
Past year average time to close pull requests: about 7 hours
Past year issue authors: 1
Past year pull request authors: 1
Past year average comments per issue: 0.0
Past year average comments per pull request: 0.33
Past year merged pull request: 6
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- rcannood (8)
- gchure (4)
- Juke34 (4)
- vincentmanz (1)
- eascarrunz (1)
Top Pull Request Authors
- Juke34 (40)
- jromanowska (4)
- rcannood (4)
Top Issue Labels
Top Pull Request Labels
Dependencies
- actions/cache v3 composite
- actions/checkout v3 composite
- docker dind docker