{"id":358991,"url":"https://github.com/MonashBioinformaticsPlatform/varistran","last_synced_at":"2026-06-23T00:02:24.327Z","repository":{"id":36269422,"uuid":"40573877","full_name":"MonashBioinformaticsPlatform/varistran","owner":"MonashBioinformaticsPlatform","description":"R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data","archived":false,"fork":false,"pushed_at":"2025-05-23T02:34:03.000Z","size":1101,"stargazers_count":21,"open_issues_count":0,"forks_count":3,"subscribers_count":14,"default_branch":"master","last_synced_at":"2025-11-30T16:05:59.343Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"lgpl-2.1","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/MonashBioinformaticsPlatform.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":"codemeta.json","zenodo":null}},"created_at":"2015-08-12T01:37:48.000Z","updated_at":"2025-07-10T06:20:45.000Z","dependencies_parsed_at":"2025-05-13T07:32:25.822Z","dependency_job_id":"9e250305-7f0d-409f-b81c-6f0412fca737","html_url":"https://github.com/MonashBioinformaticsPlatform/varistran","commit_stats":null,"previous_names":[],"tags_count":6,"template":false,"template_full_name":null,"purl":"pkg:github/MonashBioinformaticsPlatform/varistran","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fvaristran","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fvaristran/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fvaristran/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fvaristran/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MonashBioinformaticsPlatform","download_url":"https://codeload.github.com/MonashBioinformaticsPlatform/varistran/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fvaristran/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":27461605,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-12-02T02:00:06.387Z","response_time":54,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"MonashBioinformaticsPlatform","name":"Monash Bioinformatics Platform","uuid":"11252230","kind":"organization","description":"","email":"bioinformatics.platform@monash.edu","website":"https://platforms.monash.edu/bioinformatics/","location":"Monash University, Australia","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/11252230?v=4","repositories_count":84,"last_synced_at":"2024-04-23T11:36:49.184Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/MonashBioinformaticsPlatform","funding_links":[],"total_stars":221,"followers":32,"following":0,"created_at":"2022-11-07T18:42:42.985Z","updated_at":"2024-04-23T11:37:05.948Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MonashBioinformaticsPlatform","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MonashBioinformaticsPlatform/repositories"},"packages":[],"commits":{"id":9625932,"full_name":"MonashBioinformaticsPlatform/varistran","default_branch":"master","total_commits":116,"total_committers":2,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":58.0,"dds":0.008620689655172376,"past_year_total_commits":17,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":17.0,"past_year_dds":0.0,"last_synced_at":"2025-12-06T02:00:14.895Z","last_synced_commit":"ede5173ed766b14ff38ef43f649a290154cddf29","created_at":"2025-04-11T11:39:05.321Z","updated_at":"2025-12-06T02:00:14.881Z","committers":[{"name":"Paul Harrison","email":"pfh@logarithmic.net","login":"pfh","count":115},{"name":"roryk","email":"rory.kirchner@gmail.com","login":"roryk","count":1}],"past_year_committers":[{"name":"Paul Harrison","email":"pfh@logarithmic.net","login":"pfh","count":17}],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fvaristran/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-12-06T00:00:27.587Z","repositories_count":6124317,"commits_count":926118500,"contributors_count":36028438,"owners_count":1121872,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"MonashBioinformaticsPlatform/varistran","html_url":"https://github.com/MonashBioinformaticsPlatform/varistran","last_synced_at":"2025-08-31T13:11:51.650Z","status":null,"issues_count":2,"pull_requests_count":1,"avg_time_to_close_issue":44811649.0,"avg_time_to_close_pull_request":915.0,"issues_closed_count":2,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":2,"avg_comments_per_issue":3.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-04-11T11:39:05.939Z","updated_at":"2025-08-31T13:11:51.651Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fvaristran","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/MonashBioinformaticsPlatform%2Fvaristran/issues","issue_labels_count":{"table":{}},"pull_request_labels_count":{"table":{}},"issue_author_associations_count":{"table":{"NONE":1,"CONTRIBUTOR":1}},"pull_request_author_associations_count":{"table":{"CONTRIBUTOR":1}},"issue_authors":{"table":{"smazrouee":1,"roryk":1}},"pull_request_authors":{"table":{"roryk":1}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-12-04T00:00:36.861Z","repositories_count":12041537,"issues_count":35596144,"pull_requests_count":116436539,"authors_count":11047970,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{}},"past_year_pull_request_labels_count":{"table":{}},"past_year_issue_author_associations_count":{"table":{}},"past_year_pull_request_author_associations_count":{"table":{}},"past_year_issue_authors":{"table":{}},"past_year_pull_request_authors":{"table":{}},"maintainers":[],"active_maintainers":[]}},"events":{"total":{"CreateEvent":2,"IssuesEvent":1,"ReleaseEvent":1,"WatchEvent":2,"PushEvent":17},"last_year":{"CreateEvent":2,"IssuesEvent":1,"ReleaseEvent":1,"WatchEvent":2,"PushEvent":17}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-07-20T18:19:50.359Z","updated_at":"2022-07-20T18:19:50.359Z","repository_link":"https://github.com/MonashBioinformaticsPlatform/varistran/blob/master/DESCRIPTION","dependencies":[{"id":319105433,"package_name":"grid","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":319105434,"package_name":"MASS","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":319105435,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":319105436,"package_name":"shiny","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":319105437,"package_name":"miniUI","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":319105438,"package_name":"seriation","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":319105439,"package_name":"gridBase","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":319105440,"package_name":"edgeR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":319105441,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":319105442,"package_name":"DESeq2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":319105443,"package_name":"biomaRt","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":319105444,"package_name":"NBPSeq","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":3.7376696182833684,"created_at":"2025-04-11T10:24:27.323Z","updated_at":"2026-06-23T00:02:24.327Z","avatar_url":"https://github.com/MonashBioinformaticsPlatform.png","language":"R","codemeta":{"@context":"https://raw.githubusercontent.com/mbjones/codemeta/master/codemeta.jsonld","@type":"Code","author":[{"@id":"0000-0002-3980-268X","@type":"Person","email":"paul.harrison@monash.edu","name":"Paul Harrison","affiliation":"Monash Bioinformatics Platform, Monash University"}],"identifier":"","codeRepository":"https://github.com/MonashBioinformaticsPlatform/varistran","datePublished":"2017-03-13","dateModified":"2017-03-13","dateCreated":"2017-03-13","description":"Anscombe's variance stabilizing transformation for RNA-seq gene expression data.","keywords":"RNA-seq, gene expression, variance stabilizing transformation, R package","license":"LGPL v2.1","title":"Varistran","version":"v1.0.1"},"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/358991","html_url":"https://summary.ecosyste.ms/projects/358991"}