{"id":358650,"url":"https://github.com/UofABioinformaticsHub/strandCheckR","last_synced_at":"2026-06-22T23:00:37.955Z","repository":{"id":83050068,"uuid":"70646093","full_name":"UofABioinformaticsHub/strandCheckR","owner":"UofABioinformaticsHub","description":null,"archived":false,"fork":false,"pushed_at":"2026-05-01T03:27:55.000Z","size":9376,"stargazers_count":1,"open_issues_count":1,"forks_count":1,"subscribers_count":3,"default_branch":"devel","last_synced_at":"2026-06-12T18:07:01.195Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://uofabioinformaticshub.github.io/strandCheckR/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/UofABioinformaticsHub.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2016-10-12T00:18:35.000Z","updated_at":"2026-05-26T08:34:21.000Z","dependencies_parsed_at":null,"dependency_job_id":"3068ba3b-a63f-49bd-99a6-97cfd570d66a","html_url":"https://github.com/UofABioinformaticsHub/strandCheckR","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/UofABioinformaticsHub/strandCheckR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UofABioinformaticsHub","download_url":"https://codeload.github.com/UofABioinformaticsHub/strandCheckR/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34507160,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-18T02:00:06.871Z","response_time":128,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"UofABioinformaticsHub","name":"University of Adelaide, Bioinformatics Hub","uuid":"17283379","kind":"organization","description":"","email":null,"website":"https://www.adelaide.edu.au/bioinformatics-hub/","location":"Adelaide, South Australia","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/17283379?v=4","repositories_count":50,"last_synced_at":"2024-03-18T13:54:32.368Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/UofABioinformaticsHub","funding_links":[],"total_stars":70,"followers":null,"following":null,"created_at":"2023-02-25T11:22:42.937Z","updated_at":"2024-03-18T13:54:32.734Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UofABioinformaticsHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UofABioinformaticsHub/repositories"},"packages":[{"id":8420822,"name":"strandCheckR","ecosystem":"bioconductor","description":"Calculate strandness information of a bam file","homepage":"https://github.com/UofABioinformaticsHub/strandCheckR ","licenses":"GPL (\u003e= 2)","normalized_licenses":["CNRI-Python-GPL-Compatible"],"repository_url":"https://github.com/UofABioinformaticsHub/strandCheckR","keywords_array":["Alignment","Coverage","ImmunoOncology","QualityControl","RNASeq","Software"],"namespace":null,"versions_count":7,"first_release_published_at":"2023-10-12T15:03:24.367Z","latest_release_published_at":"2026-04-30T21:01:37.198Z","latest_release_number":"1.30.0","last_synced_at":"2026-06-20T22:00:43.275Z","created_at":"2023-10-12T15:03:23.775Z","updated_at":"2026-06-20T22:00:43.276Z","registry_url":"https://bioconductor.org/packages/strandCheckR","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/strandCheckR/inst/doc/strandCheckR.pdf","metadata":{},"repo_metadata":{"id":83050068,"uuid":"70646093","full_name":"UofABioinformaticsHub/strandCheckR","owner":"UofABioinformaticsHub","description":null,"archived":false,"fork":false,"pushed_at":"2026-05-01T03:27:55.000Z","size":9376,"stargazers_count":1,"open_issues_count":1,"forks_count":1,"subscribers_count":3,"default_branch":"devel","last_synced_at":"2026-06-12T18:07:01.195Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://uofabioinformaticshub.github.io/strandCheckR/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/UofABioinformaticsHub.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2016-10-12T00:18:35.000Z","updated_at":"2026-05-26T08:34:21.000Z","dependencies_parsed_at":null,"dependency_job_id":"3068ba3b-a63f-49bd-99a6-97cfd570d66a","html_url":"https://github.com/UofABioinformaticsHub/strandCheckR","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/UofABioinformaticsHub/strandCheckR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UofABioinformaticsHub","download_url":"https://codeload.github.com/UofABioinformaticsHub/strandCheckR/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34421326,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-16T02:00:06.860Z","response_time":126,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"UofABioinformaticsHub","name":"University of Adelaide, Bioinformatics Hub","uuid":"17283379","kind":"organization","description":"","email":null,"website":"https://www.adelaide.edu.au/bioinformatics-hub/","location":"Adelaide, South Australia","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/17283379?v=4","repositories_count":50,"last_synced_at":"2024-03-18T13:54:32.368Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/UofABioinformaticsHub","funding_links":[],"total_stars":70,"followers":null,"following":null,"created_at":"2023-02-25T11:22:42.937Z","updated_at":"2024-03-18T13:54:32.734Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UofABioinformaticsHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UofABioinformaticsHub/repositories"},"tags":[{"name":"v1.1.2","sha":"f5407f55a681debd31f6c352d12176ed7ac5c646","kind":"commit","published_at":"2019-02-01T08:55:34.000Z","download_url":"https://codeload.github.com/UofABioinformaticsHub/strandCheckR/tar.gz/v1.1.2","html_url":"https://github.com/UofABioinformaticsHub/strandCheckR/releases/tag/v1.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/UofABioinformaticsHub/strandCheckR@v1.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/tags/v1.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/tags/v1.1.2/manifests"}]},"repo_metadata_updated_at":"2026-06-16T20:02:44.635Z","dependent_packages_count":0,"downloads":null,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":69.5964125560538,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":33.20610687022901,"forks_count":18.39080459770115,"docker_downloads_count":null,"average":24.23866480479679},"purl":"pkg:bioconductor/strandCheckR","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/strandCheckR","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/strandCheckR","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/strandCheckR/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2026-06-08T16:03:27.572Z","issues_count":12,"pull_requests_count":4,"avg_time_to_close_issue":2498293.909090909,"avg_time_to_close_pull_request":88216407.75,"issues_closed_count":11,"pull_requests_closed_count":4,"pull_request_authors_count":2,"issue_authors_count":2,"avg_comments_per_issue":1.5833333333333333,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":21064352.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":1.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/issues","maintainers":[{"login":"smped","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/smped"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/strandCheckR/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/strandCheckR/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/strandCheckR/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/strandCheckR/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/strandCheckR/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/strandCheckR/codemeta","maintainers":[{"uuid":"tothuhien@gmail.com","login":null,"name":"Thu-Hien To","email":"tothuhien@gmail.com","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-20T14:24:30.440Z","updated_at":"2023-11-20T14:24:30.440Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/tothuhien@gmail.com/packages"}],"registry":{"name":"bioconductor.org","url":"https://bioconductor.org","ecosystem":"bioconductor","default":true,"packages_count":2657,"maintainers_count":3314,"namespaces_count":0,"keywords_count":1119,"github":"Bioconductor","metadata":{"funded_packages_count":4},"icon_url":"https://github.com/Bioconductor.png","created_at":"2023-10-12T14:09:56.428Z","updated_at":"2026-06-21T05:02:21.974Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/namespaces"}}],"commits":{"id":1403462,"full_name":"UofABioinformaticsHub/strandCheckR","default_branch":"devel","total_commits":285,"total_committers":12,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":23.75,"dds":0.36140350877192984,"past_year_total_commits":7,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":2.3333333333333335,"past_year_dds":0.4285714285714286,"last_synced_at":"2026-06-20T22:02:40.545Z","last_synced_commit":"03d5abbba66188f486f41ecf734a1d50f0aa5e11","created_at":"2023-10-25T13:16:12.071Z","updated_at":"2026-06-20T22:01:40.857Z","committers":[{"name":"tothuhien","email":"tothuhien@gmail.com","login":"tothuhien","count":182},{"name":"steveped","email":"stephen.pederson.au@gmail.com","login":"smped","count":33},{"name":"Thu Hien","email":"thut@cn-9.orion.nmbu.no","login":null,"count":19},{"name":"Nitesh Turaga","email":"nitesh.turaga@gmail.com","login":"nturaga","count":14},{"name":"J Wokaty","email":"jennifer.wokaty@sph.cuny.edu","login":"jwokaty","count":10},{"name":"Thu-Hien To","email":"hien@Thu-Hiens-MacBook-Pro.local","login":null,"count":10},{"name":"Steve Pederson","email":"steveped","login":"steveped","count":6},{"name":"A Wokaty","email":"andres.wokaty@sph.cuny.edu","login":null,"count":6},{"name":"vobencha","email":"vobencha@gmail.com","login":"vobencha","count":2},{"name":"rmflight","email":"r.flight79@gmail.com","login":"rmflight","count":1},{"name":"LiNk-NY","email":"mramos09@gmail.com","login":"LiNk-NY","count":1},{"name":"Hervé Pagès","email":"hpages.on.github@gmail.com","login":"hpages","count":1}],"past_year_committers":[{"name":"A Wokaty","email":"andres.wokaty@sph.cuny.edu","login":null,"count":4},{"name":"Stevie Ped","email":"stephen.pederson.au@gmail.com","login":"smped","count":2},{"name":"Hervé Pagès","email":"hpages.on.github@gmail.com","login":"hpages","count":1}],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-22T00:00:10.186Z","repositories_count":6266062,"commits_count":874697496,"contributors_count":35091139,"owners_count":1170207,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"UofABioinformaticsHub/strandCheckR","html_url":"https://github.com/UofABioinformaticsHub/strandCheckR","last_synced_at":"2026-06-08T16:03:27.572Z","status":"error","issues_count":12,"pull_requests_count":4,"avg_time_to_close_issue":2498293.909090909,"avg_time_to_close_pull_request":88216407.75,"issues_closed_count":11,"pull_requests_closed_count":4,"pull_request_authors_count":2,"issue_authors_count":2,"avg_comments_per_issue":1.5833333333333333,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":21064352.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":1.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-11-22T01:13:33.304Z","updated_at":"2026-06-08T16:03:27.572Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/UofABioinformaticsHub%2FstrandCheckR/issues","issue_labels_count":{"table":{}},"pull_request_labels_count":{"table":{}},"issue_author_associations_count":{"table":{"CONTRIBUTOR":9,"MEMBER":3}},"pull_request_author_associations_count":{"table":{"MEMBER":3,"CONTRIBUTOR":1}},"issue_authors":{"table":{"rmflight":9,"smped":3}},"pull_request_authors":{"table":{"smped":3,"rmflight":1}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-18T00:00:09.580Z","repositories_count":14815666,"issues_count":33097703,"pull_requests_count":109195304,"authors_count":11310803,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{}},"past_year_pull_request_labels_count":{"table":{}},"past_year_issue_author_associations_count":{"table":{}},"past_year_pull_request_author_associations_count":{"table":{}},"past_year_issue_authors":{"table":{}},"past_year_pull_request_authors":{"table":{}},"maintainers":[{"table":{"login":"smped","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/smped"}}],"active_maintainers":[]}},"events":{"total":{"DeleteEvent":1,"PullRequestEvent":1,"IssuesEvent":1,"IssueCommentEvent":1,"PushEvent":5,"CreateEvent":6},"last_year":{"CreateEvent":2}},"keywords":[],"dependencies":[],"score":3.1780538303479458,"created_at":"2025-04-11T10:23:23.240Z","updated_at":"2026-06-22T23:00:37.955Z","avatar_url":"https://github.com/UofABioinformaticsHub.png","language":"R","codemeta":null,"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/358650","html_url":"https://summary.ecosyste.ms/projects/358650"}