{"id":358452,"url":"https://github.com/giorginolab/vmd_diffusion_coefficient","last_synced_at":"2026-06-23T00:00:33.175Z","repository":{"id":17824477,"uuid":"20725898","full_name":"giorginolab/vmd_diffusion_coefficient","owner":"giorginolab","description":"Computing Diffusion Coefficients in Macromolecular Simulations: The Diffusion Coefficient Tool for VMD","archived":false,"fork":false,"pushed_at":"2023-01-26T14:49:33.000Z","size":572,"stargazers_count":36,"open_issues_count":1,"forks_count":13,"subscribers_count":4,"default_branch":"master","last_synced_at":"2026-06-08T17:03:19.809Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://doi.org/10.21105/joss.01698","language":"Tcl","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/giorginolab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2014-06-11T13:20:18.000Z","updated_at":"2025-11-29T14:17:32.000Z","dependencies_parsed_at":"2023-02-14T18:16:20.985Z","dependency_job_id":null,"html_url":"https://github.com/giorginolab/vmd_diffusion_coefficient","commit_stats":null,"previous_names":[],"tags_count":6,"template":false,"template_full_name":null,"purl":"pkg:github/giorginolab/vmd_diffusion_coefficient","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/giorginolab%2Fvmd_diffusion_coefficient","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/giorginolab%2Fvmd_diffusion_coefficient/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/giorginolab%2Fvmd_diffusion_coefficient/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/giorginolab%2Fvmd_diffusion_coefficient/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/giorginolab","download_url":"https://codeload.github.com/giorginolab/vmd_diffusion_coefficient/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/giorginolab%2Fvmd_diffusion_coefficient/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34423223,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-16T02:00:06.860Z","response_time":126,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"giorginolab","name":"Giorgino Laboratory","uuid":"49805621","kind":"organization","description":"Computational Biophysics","email":null,"website":"www.giorginolab.it","location":"Milan, Italy","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/49805621?v=4","repositories_count":63,"last_synced_at":"2024-03-26T20:58:00.303Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/giorginolab","funding_links":[],"total_stars":166,"followers":10,"following":0,"created_at":"2022-11-04T10:05:00.635Z","updated_at":"2024-03-26T20:58:00.969Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/giorginolab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/giorginolab/repositories"},"packages":[],"commits":{"id":9625532,"full_name":"giorginolab/vmd_diffusion_coefficient","default_branch":"master","total_commits":105,"total_committers":2,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":52.5,"dds":0.20952380952380956,"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2026-06-20T23:02:19.324Z","last_synced_commit":"a4ec010f616b7b346bb29c6ea64ba3adcb05accd","created_at":"2025-04-11T11:31:17.137Z","updated_at":"2026-06-20T23:02:05.342Z","committers":[{"name":"Toni","email":"toni.giorgino@gmail.com","login":"tonigi","count":83},{"name":"Toni Giorgino","email":"toni.giorgino@isib.cnr.it","login":null,"count":22}],"past_year_committers":[],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/giorginolab%2Fvmd_diffusion_coefficient/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-23T00:00:10.068Z","repositories_count":6266133,"commits_count":874708242,"contributors_count":35091765,"owners_count":1170242,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"giorginolab/vmd_diffusion_coefficient","html_url":"https://github.com/giorginolab/vmd_diffusion_coefficient","last_synced_at":"2025-08-31T21:15:50.123Z","status":"error","issues_count":16,"pull_requests_count":0,"avg_time_to_close_issue":3942996.8,"avg_time_to_close_pull_request":null,"issues_closed_count":15,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":8,"avg_comments_per_issue":1.75,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-04-11T11:31:17.388Z","updated_at":"2025-08-31T23:17:33.859Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/giorginolab%2Fvmd_diffusion_coefficient","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/giorginolab%2Fvmd_diffusion_coefficient/issues","issue_labels_count":{"table":{}},"pull_request_labels_count":{"table":{}},"issue_author_associations_count":{"table":{"NONE":14,"COLLABORATOR":1}},"pull_request_author_associations_count":{"table":{}},"issue_authors":{"table":{"jrperilla":7,"HaoZeke":3,"TianmingQu":1,"tonigi":1,"groponp":1,"jiroegbu":1,"maurosgroi":1}},"pull_request_authors":{"table":{}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-20T00:00:09.966Z","repositories_count":14821529,"issues_count":33023582,"pull_requests_count":108935862,"authors_count":11313173,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{}},"past_year_pull_request_labels_count":{"table":{}},"past_year_issue_author_associations_count":{"table":{}},"past_year_pull_request_author_associations_count":{"table":{}},"past_year_issue_authors":{"table":{}},"past_year_pull_request_authors":{"table":{}},"maintainers":[{"table":{"login":"tonigi","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/tonigi"}}],"active_maintainers":[]}},"events":{"total":{"WatchEvent":1,"ForkEvent":1},"last_year":{"WatchEvent":1}},"keywords":[],"dependencies":[],"score":4.304065093204169,"created_at":"2025-04-11T10:22:47.807Z","updated_at":"2026-06-23T00:00:33.175Z","avatar_url":"https://github.com/giorginolab.png","language":"Tcl","codemeta":null,"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/358452","html_url":"https://summary.ecosyste.ms/projects/358452"}