{"id":358338,"url":"https://github.com/gyorilab/adeft","last_synced_at":"2026-06-22T23:00:37.801Z","repository":{"id":34911213,"uuid":"156276061","full_name":"gyorilab/adeft","owner":"gyorilab","description":"Tool for disambiguating acronyms and abbreviations in text for NLP applications","archived":false,"fork":false,"pushed_at":"2026-03-26T19:57:27.000Z","size":11732,"stargazers_count":22,"open_issues_count":0,"forks_count":10,"subscribers_count":5,"default_branch":"master","last_synced_at":"2026-06-12T18:06:50.526Z","etag":null,"topics":["acronym-disambiguation"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-2-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/gyorilab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2018-11-05T20:08:03.000Z","updated_at":"2026-03-26T19:57:34.000Z","dependencies_parsed_at":"2024-05-09T04:27:30.022Z","dependency_job_id":"dcdf4794-cc87-45ba-a6cc-2bf9c75730bf","html_url":"https://github.com/gyorilab/adeft","commit_stats":{"total_commits":930,"total_committers":9,"mean_commits":"103.33333333333333","dds":"0.15053763440860213","last_synced_commit":"cbb643d6d4b8378931292295743c67d285419cab"},"previous_names":["gyorilab/adeft","indralab/adeft"],"tags_count":17,"template":false,"template_full_name":null,"purl":"pkg:github/gyorilab/adeft","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gyorilab%2Fadeft","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gyorilab%2Fadeft/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gyorilab%2Fadeft/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gyorilab%2Fadeft/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gyorilab","download_url":"https://codeload.github.com/gyorilab/adeft/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gyorilab%2Fadeft/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34421326,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-16T02:00:06.860Z","response_time":126,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"gyorilab","name":"Gyori Lab for Computational Biomedicine","uuid":"41387246","kind":"organization","description":"Accelerating discovery in biomedicine using AI @ Northeastern University","email":"indra.sysbio@gmail.com","website":"gyorilab.github.io","location":"United States of America","twitter":"indrasysbio","company":null,"icon_url":"https://avatars.githubusercontent.com/u/41387246?v=4","repositories_count":1,"last_synced_at":"2023-08-29T22:33:50.489Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/gyorilab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-13T02:03:50.691Z","updated_at":"2023-08-29T22:33:50.499Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gyorilab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gyorilab/repositories"},"packages":[],"commits":{"id":1378329,"full_name":"gyorilab/adeft","default_branch":"master","total_commits":963,"total_committers":9,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":107.0,"dds":0.1796469366562824,"past_year_total_commits":32,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":32.0,"past_year_dds":0.0,"last_synced_at":"2026-06-20T22:01:59.372Z","last_synced_commit":"770fb6c3f83e70c088bc0d767481565e6f5b5b5a","created_at":"2023-09-18T14:17:56.624Z","updated_at":"2026-06-20T22:00:55.563Z","committers":[{"name":"steppi","email":"albert_steppi@hms.harvard.edu","login":null,"count":790},{"name":"steppi","email":"1953382+steppi","login":"steppi","count":47},{"name":"steppi","email":"albert_steppi@hms.harvard.edusdfjdifjijs","login":null,"count":43},{"name":"Ben Gyori","email":"ben.gyori@gmail.com","login":"bgyori","count":26},{"name":"Albert Steppi","email":"albertsteppi@Alberts-MacBook-Pro.local","login":null,"count":25},{"name":"John Bachman","email":"bachmanjohn@gmail.com","login":"johnbachman","count":22},{"name":"Charles Tapley Hoyt","email":"cthoyt@gmail.com","login":"cthoyt","count":8},{"name":"Kyle Niemeyer","email":"kyle.niemeyer@gmail.com","login":"kyleniemeyer","count":1},{"name":"Ubuntu","email":"ubuntu@ip-172-31-16-196.ec2.internal","login":null,"count":1}],"past_year_committers":[{"name":"steppi","email":"1953382+steppi","login":"steppi","count":32}],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/gyorilab%2Fadeft/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-22T00:00:10.186Z","repositories_count":6266062,"commits_count":874697496,"contributors_count":35091139,"owners_count":1170207,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"gyorilab/adeft","html_url":"https://github.com/gyorilab/adeft","last_synced_at":"2026-05-17T05:10:54.694Z","status":"active","issues_count":10,"pull_requests_count":78,"avg_time_to_close_issue":1107857.25,"avg_time_to_close_pull_request":500975.80263157893,"issues_closed_count":8,"pull_requests_closed_count":76,"pull_request_authors_count":5,"issue_authors_count":6,"avg_comments_per_issue":1.6,"avg_comments_per_pull_request":0.358974358974359,"merged_pull_requests_count":70,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":3,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":1680480.5,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":1.6666666666666667,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2023-09-18T14:17:57.183Z","updated_at":"2026-05-17T05:10:54.694Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/gyorilab%2Fadeft","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/gyorilab%2Fadeft/issues","issue_labels_count":{"table":{}},"pull_request_labels_count":{"table":{}},"issue_author_associations_count":{"table":{"MEMBER":5,"NONE":3,"COLLABORATOR":2}},"pull_request_author_associations_count":{"table":{"COLLABORATOR":63,"MEMBER":12,"NONE":2,"CONTRIBUTOR":1}},"issue_authors":{"table":{"bgyori":3,"kkaris":2,"cthoyt":2,"arvindpdmn":1,"teja0508":1,"izikeros":1}},"pull_request_authors":{"table":{"steppi":63,"cthoyt":8,"bgyori":4,"jim-sheldon":2,"kyleniemeyer":1}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-12T00:00:21.419Z","repositories_count":14792547,"issues_count":33200524,"pull_requests_count":109506247,"authors_count":11302899,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{}},"past_year_pull_request_labels_count":{"table":{}},"past_year_issue_author_associations_count":{"table":{}},"past_year_pull_request_author_associations_count":{"table":{"COLLABORATOR":3}},"past_year_issue_authors":{"table":{}},"past_year_pull_request_authors":{"table":{"steppi":3}},"maintainers":[{"table":{"login":"steppi","count":63,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/steppi"}},{"table":{"login":"cthoyt","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cthoyt"}},{"table":{"login":"bgyori","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bgyori"}},{"table":{"login":"kkaris","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kkaris"}}],"active_maintainers":[{"table":{"login":"steppi","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/steppi"}}]}},"events":{"total":{"PullRequestEvent":4,"WatchEvent":2,"PushEvent":1,"CreateEvent":1},"last_year":{"PullRequestEvent":4,"PushEvent":1,"CreateEvent":1}},"keywords":["acronym-disambiguation"],"dependencies":[{"ecosystem":"pypi","filepath":"doc/requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-27T04:00:58.185Z","updated_at":"2022-08-27T04:00:58.185Z","repository_link":"https://github.com/gyorilab/adeft/blob/master/doc/requirements.txt","dependencies":[{"id":2883485522,"package_name":"sphinx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2883485523,"package_name":"sphinx_rtd_theme","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2883485524,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=0.20.0","direct":true,"kind":"runtime","optional":false},{"id":2883485525,"package_name":"nltk","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2883485526,"package_name":"boto3","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2883485527,"package_name":"flask","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2883485528,"package_name":"appdirs","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-08-27T04:00:58.194Z","updated_at":"2022-08-27T04:00:58.194Z","repository_link":"https://github.com/gyorilab/adeft/blob/master/setup.py","dependencies":[{"id":2883485537,"package_name":"nltk","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2883485538,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=0.20.0","direct":true,"kind":"runtime","optional":false},{"id":2883485539,"package_name":"boto3","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2883485540,"package_name":"flask","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2883485541,"package_name":"appdirs","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/tests.yml","sha":null,"kind":"manifest","created_at":"2023-01-15T10:16:00.083Z","updated_at":"2023-01-15T10:16:00.083Z","repository_link":"https://github.com/gyorilab/adeft/blob/master/.github/workflows/tests.yml","dependencies":[{"id":6922136284,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6922136285,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2024-05-09T04:27:29.836Z","updated_at":"2024-05-09T04:27:29.836Z","repository_link":"https://github.com/gyorilab/adeft/blob/master/pyproject.toml","dependencies":[{"id":17988259618,"package_name":"nltk","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":17988259619,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=1.0","direct":true,"kind":"runtime","optional":false},{"id":17988259620,"package_name":"boto3","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":17988259621,"package_name":"flask","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":17988259622,"package_name":"appdirs","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":5.288267030694536,"created_at":"2025-04-11T10:22:28.998Z","updated_at":"2026-06-22T23:00:37.802Z","avatar_url":"https://github.com/gyorilab.png","language":"Python","codemeta":null,"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/358338","html_url":"https://summary.ecosyste.ms/projects/358338"}