{"id":358315,"url":"https://github.com/titipata/pubmed_parser","last_synced_at":"2026-06-22T23:00:31.233Z","repository":{"id":28195030,"uuid":"31697087","full_name":"titipata/pubmed_parser","owner":"titipata","description":":clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset","archived":false,"fork":false,"pushed_at":"2025-07-31T15:29:44.000Z","size":63328,"stargazers_count":735,"open_issues_count":21,"forks_count":180,"subscribers_count":21,"default_branch":"master","last_synced_at":"2026-06-20T22:03:23.647Z","etag":null,"topics":["article","doi","medline-xml","nlp","parse","parser","pmid","pubmed-central","pubmed-parser","python","xml"],"latest_commit_sha":null,"homepage":"http://titipata.github.io/pubmed_parser/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/titipata.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2015-03-05T05:13:57.000Z","updated_at":"2026-06-18T09:57:32.000Z","dependencies_parsed_at":"2023-02-16T01:00:49.803Z","dependency_job_id":"7e9bba5c-82cf-432e-b600-0a7513be1bcb","html_url":"https://github.com/titipata/pubmed_parser","commit_stats":{"total_commits":305,"total_committers":35,"mean_commits":8.714285714285714,"dds":0.6721311475409837,"last_synced_commit":"327403ffd043989076374de9bcd6e02e301f4347"},"previous_names":[],"tags_count":10,"template":false,"template_full_name":null,"purl":"pkg:github/titipata/pubmed_parser","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/titipata","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/sbom","scorecard":{"id":887884,"data":{"date":"2025-08-11","repo":{"name":"github.com/titipata/pubmed_parser","commit":"b493fb9abd8e43ff031b884a89a900ebf5d06e86"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":4.3,"checks":[{"name":"Maintained","score":3,"reason":"2 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 3","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/test-and-build-docs.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Code-Review","score":6,"reason":"Found 15/24 approved changesets -- score normalized to 6","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:14: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:20: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:33: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:38: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:44: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:60: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: pipCommand not pinned by hash: .github/workflows/test-and-build-docs.yml:49","Warn: pipCommand not pinned by hash: .github/workflows/test-and-build-docs.yml:50","Warn: pipCommand not pinned by hash: .github/workflows/test-and-build-docs.yml:25","Warn: pipCommand not pinned by hash: .github/workflows/test-and-build-docs.yml:26","Info:   0 out of   4 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   2 third-party GitHubAction dependencies pinned","Info:   0 out of   4 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 21 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-24T10:40:42.372Z","repository_id":28195030,"created_at":"2025-08-24T10:40:42.372Z","updated_at":"2025-08-24T10:40:42.372Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34668499,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-22T02:00:06.391Z","response_time":106,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"titipata","name":"Titipat Achakulvisut","uuid":"8295838","kind":"user","description":"Applied ML \u0026 Science of Science @biodatlab Mahidol University | Former @KordingLab UPenn, intern @allenai, organizer/co-founder @neuromatch","email":"","website":"titipata.github.io","location":"Bangkok, Thailand","twitter":"titipat_a","company":"Mahidol University","icon_url":"https://avatars.githubusercontent.com/u/8295838?u=899c9a74f288d297372303e5874d966feeebfbec\u0026v=4","repositories_count":47,"last_synced_at":"2024-10-31T07:04:20.293Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/titipata","funding_links":[],"total_stars":1498,"followers":467,"following":316,"created_at":"2022-11-09T12:42:36.491Z","updated_at":"2024-10-31T07:04:20.295Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/titipata","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/titipata/repositories"},"packages":[{"id":14287415,"name":"github.com/titipata/pubmed_parser","ecosystem":"go","description":null,"homepage":null,"licenses":null,"normalized_licenses":[],"repository_url":"https://github.com/titipata/pubmed_parser","keywords_array":[],"namespace":null,"versions_count":2,"first_release_published_at":"2020-02-08T01:14:32.000Z","latest_release_published_at":"2020-02-08T17:34:31.000Z","latest_release_number":"v0.2.3","last_synced_at":"2026-06-20T22:00:33.158Z","created_at":"2026-04-21T08:48:24.655Z","updated_at":"2026-06-20T22:00:33.158Z","registry_url":"https://pkg.go.dev/github.com/titipata/pubmed_parser","install_command":"go get github.com/titipata/pubmed_parser","documentation_url":"https://pkg.go.dev/github.com/titipata/pubmed_parser#section-documentation","metadata":{},"repo_metadata":{},"repo_metadata_updated_at":"2026-04-21T10:27:31.239Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":5.149326375246864,"dependent_packages_count":4.825008785582799,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":4.987167580414832},"purl":"pkg:golang/github.com/titipata/pubmed_parser","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/go/github.com/titipata/pubmed_parser","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/go/github.com/titipata/pubmed_parser","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/go/github.com/titipata/pubmed_parser/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Ftitipata%2Fpubmed_parser/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Ftitipata%2Fpubmed_parser/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Ftitipata%2Fpubmed_parser/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Ftitipata%2Fpubmed_parser/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Ftitipata%2Fpubmed_parser/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Ftitipata%2Fpubmed_parser/codemeta","maintainers":[],"registry":{"name":"proxy.golang.org","url":"https://proxy.golang.org","ecosystem":"go","default":true,"packages_count":2183916,"maintainers_count":0,"namespaces_count":792747,"keywords_count":113213,"github":"golang","metadata":{"funded_packages_count":53976},"icon_url":"https://github.com/golang.png","created_at":"2022-04-04T15:19:22.939Z","updated_at":"2026-06-10T05:03:23.672Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/namespaces"}},{"id":13951082,"name":"python-pubmed-parser","ecosystem":"guix","description":"Parser for Pubmed Open-Access Subset and MEDLINE XML repository","homepage":"https://titipata.github.io/pubmed_parser/","licenses":"expat","normalized_licenses":["Other"],"repository_url":"https://github.com/titipata/pubmed_parser","keywords_array":[],"namespace":null,"versions_count":1,"first_release_published_at":"2026-03-02T19:10:15.913Z","latest_release_published_at":"2026-03-02T19:10:15.913Z","latest_release_number":"0.5.1","last_synced_at":"2026-04-27T16:26:13.181Z","created_at":"2026-03-02T19:10:15.692Z","updated_at":"2026-04-27T16:26:13.781Z","registry_url":"https://packages.guix.gnu.org/packages/python-pubmed-parser/0.5.1/","install_command":"guix install python-pubmed-parser","documentation_url":"https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/python-xyz.scm#n15003","metadata":{"location":"gnu/packages/python-xyz.scm:15003","variable_name":"python-pubmed-parser"},"repo_metadata":{},"repo_metadata_updated_at":"2026-04-27T16:26:13.760Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":100},"purl":"pkg:guix/python-pubmed-parser","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/guix/python-pubmed-parser","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/guix/python-pubmed-parser","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/guix/python-pubmed-parser/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/guix/packages/python-pubmed-parser/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/guix/packages/python-pubmed-parser/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/guix/packages/python-pubmed-parser/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/guix/packages/python-pubmed-parser/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/guix/packages/python-pubmed-parser/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/guix/packages/python-pubmed-parser/codemeta","maintainers":[],"registry":{"name":"guix","url":"https://guix.gnu.org","ecosystem":"guix","default":true,"packages_count":31803,"maintainers_count":0,"namespaces_count":0,"keywords_count":1627,"github":"guix-mirror","metadata":{"funded_packages_count":368},"icon_url":"https://github.com/guix-mirror.png","created_at":"2026-03-02T16:23:46.981Z","updated_at":"2026-06-10T05:17:25.224Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/guix/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/guix/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/guix/namespaces"}},{"id":2862789,"name":"pubmed-parser","ecosystem":"pypi","description":"A python parser for Pubmed Open-Access Subset and MEDLINE XML repository","homepage":null,"licenses":"MIT (c) 2015 - 2024 Titipat Achakulvisut, Daniel E. Acuna","normalized_licenses":["MIT-0"],"repository_url":"https://github.com/titipata/pubmed_parser","keywords_array":["Python","MEDLINE","PubMed","Biomedical corpus","Natural Language Processing"],"namespace":null,"versions_count":5,"first_release_published_at":"2021-07-16T13:20:21.000Z","latest_release_published_at":"2024-08-30T02:53:13.000Z","latest_release_number":"0.5.1","last_synced_at":"2026-06-20T22:00:30.329Z","created_at":"2022-04-10T12:08:26.000Z","updated_at":"2026-06-20T22:00:32.601Z","registry_url":"https://pypi.org/project/pubmed-parser/","install_command":"pip install pubmed-parser --index-url https://pypi.org/simple","documentation_url":"https://pubmed-parser.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Intended Audience :: Developers","Intended Audience :: Science/Research","License :: OSI Approved :: MIT License","Natural Language :: English","Operating System :: MacOS","Operating System :: Microsoft :: Windows","Operating System :: Unix","Programming Language :: Python","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.6","Programming Language :: Python :: 3.7","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Topic :: Scientific/Engineering","Topic :: Scientific/Engineering :: Information Analysis","Topic :: Software Development","Topic :: Software Development :: Libraries :: Python Modules"],"normalized_name":"pubmed-parser","project_status":null},"repo_metadata":{"id":28195030,"uuid":"31697087","full_name":"titipata/pubmed_parser","owner":"titipata","description":":clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset","archived":false,"fork":false,"pushed_at":"2025-07-31T15:29:44.000Z","size":63328,"stargazers_count":733,"open_issues_count":21,"forks_count":180,"subscribers_count":21,"default_branch":"master","last_synced_at":"2026-06-12T18:06:51.003Z","etag":null,"topics":["article","doi","medline-xml","nlp","parse","parser","pmid","pubmed-central","pubmed-parser","python","xml"],"latest_commit_sha":null,"homepage":"http://titipata.github.io/pubmed_parser/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/titipata.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2015-03-05T05:13:57.000Z","updated_at":"2026-06-12T08:31:27.000Z","dependencies_parsed_at":"2023-02-16T01:00:49.803Z","dependency_job_id":"7e9bba5c-82cf-432e-b600-0a7513be1bcb","html_url":"https://github.com/titipata/pubmed_parser","commit_stats":{"total_commits":305,"total_committers":35,"mean_commits":8.714285714285714,"dds":0.6721311475409837,"last_synced_commit":"327403ffd043989076374de9bcd6e02e301f4347"},"previous_names":[],"tags_count":10,"template":false,"template_full_name":null,"purl":"pkg:github/titipata/pubmed_parser","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/titipata","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/sbom","scorecard":{"id":887884,"data":{"date":"2025-08-11","repo":{"name":"github.com/titipata/pubmed_parser","commit":"b493fb9abd8e43ff031b884a89a900ebf5d06e86"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":4.3,"checks":[{"name":"Maintained","score":3,"reason":"2 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 3","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/test-and-build-docs.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Code-Review","score":6,"reason":"Found 15/24 approved changesets -- score normalized to 6","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:14: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:20: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:33: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:38: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:44: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/test-and-build-docs.yml:60: update your workflow using https://app.stepsecurity.io/secureworkflow/titipata/pubmed_parser/test-and-build-docs.yml/master?enable=pin","Warn: pipCommand not pinned by hash: .github/workflows/test-and-build-docs.yml:49","Warn: pipCommand not pinned by hash: .github/workflows/test-and-build-docs.yml:50","Warn: pipCommand not pinned by hash: .github/workflows/test-and-build-docs.yml:25","Warn: pipCommand not pinned by hash: .github/workflows/test-and-build-docs.yml:26","Info:   0 out of   4 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   2 third-party GitHubAction dependencies pinned","Info:   0 out of   4 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 21 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-24T10:40:42.372Z","repository_id":28195030,"created_at":"2025-08-24T10:40:42.372Z","updated_at":"2025-08-24T10:40:42.372Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34333806,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-14T02:00:07.365Z","response_time":62,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"titipata","name":"Titipat Achakulvisut","uuid":"8295838","kind":"user","description":"Applied ML \u0026 Science of Science @biodatlab Mahidol University | Former @KordingLab UPenn, intern @allenai, organizer/co-founder @neuromatch","email":"","website":"titipata.github.io","location":"Bangkok, Thailand","twitter":"titipat_a","company":"Mahidol University","icon_url":"https://avatars.githubusercontent.com/u/8295838?u=899c9a74f288d297372303e5874d966feeebfbec\u0026v=4","repositories_count":47,"last_synced_at":"2024-10-31T07:04:20.293Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/titipata","funding_links":[],"total_stars":1498,"followers":467,"following":316,"created_at":"2022-11-09T12:42:36.491Z","updated_at":"2024-10-31T07:04:20.295Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/titipata","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/titipata/repositories"},"tags":[{"name":"0.5.1","sha":"a6e846d25f89abb8237766669ebcc9708bac2cad","kind":"tag","published_at":"2024-08-30T02:52:36.000Z","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/0.5.1","html_url":"https://github.com/titipata/pubmed_parser/releases/tag/0.5.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/titipata/pubmed_parser@0.5.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.5.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.5.1/manifests"},{"name":"0.5","sha":"fdb316975a966753f7fe00964aeb83f1b5d39ed4","kind":"tag","published_at":"2024-08-12T03:31:47.000Z","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/0.5","html_url":"https://github.com/titipata/pubmed_parser/releases/tag/0.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/titipata/pubmed_parser@0.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.5/manifests"},{"name":"0.4.0","sha":"024694a6a84aff62d12a90d6ef0536cbcfb8d959","kind":"tag","published_at":"2024-04-13T12:51:59.000Z","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/0.4.0","html_url":"https://github.com/titipata/pubmed_parser/releases/tag/0.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/titipata/pubmed_parser@0.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.4.0/manifests"},{"name":"0.3.1","sha":"ca03cf47801a643fe0c54d320a6e299f3ece59ed","kind":"commit","published_at":"2021-11-15T10:47:19.000Z","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/0.3.1","html_url":"https://github.com/titipata/pubmed_parser/releases/tag/0.3.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/titipata/pubmed_parser@0.3.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.3.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.3.1/manifests"},{"name":"0.3.0","sha":"42c8cccd594ff0e417ac81be9300808c08788117","kind":"commit","published_at":"2021-07-01T18:51:45.000Z","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/0.3.0","html_url":"https://github.com/titipata/pubmed_parser/releases/tag/0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/titipata/pubmed_parser@0.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.3.0/manifests"},{"name":"v0.2.3","sha":"a4bcf4e1b88835b65e8c34caab7466b0873bf545","kind":"commit","published_at":"2020-02-08T17:34:31.000Z","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/v0.2.3","html_url":"https://github.com/titipata/pubmed_parser/releases/tag/v0.2.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/titipata/pubmed_parser@v0.2.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/v0.2.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/v0.2.3/manifests"},{"name":"v0.2.2","sha":"6d17486ee3a6ba4db9c09db947543fce1e389912","kind":"commit","published_at":"2020-02-08T01:14:32.000Z","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/v0.2.2","html_url":"https://github.com/titipata/pubmed_parser/releases/tag/v0.2.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/titipata/pubmed_parser@v0.2.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/v0.2.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/v0.2.2/manifests"},{"name":"0.2.2","sha":"29ad825f55eeab07a52919325a7021e0c407bcc1","kind":"commit","published_at":"2020-02-06T17:23:16.000Z","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/0.2.2","html_url":"https://github.com/titipata/pubmed_parser/releases/tag/0.2.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/titipata/pubmed_parser@0.2.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.2.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.2.2/manifests"},{"name":"0.2.1","sha":"7ec93143c75d4e236f59cba43b776cc04d491304","kind":"commit","published_at":"2019-12-11T21:34:24.000Z","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/0.2.1","html_url":"https://github.com/titipata/pubmed_parser/releases/tag/0.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/titipata/pubmed_parser@0.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.2.1/manifests"},{"name":"0.1","sha":"8dd7fe0740f394222ed0bce21bf09da89114320e","kind":"commit","published_at":"2016-10-06T22:57:06.000Z","download_url":"https://codeload.github.com/titipata/pubmed_parser/tar.gz/0.1","html_url":"https://github.com/titipata/pubmed_parser/releases/tag/0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/titipata/pubmed_parser@0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/tags/0.1/manifests"}]},"repo_metadata_updated_at":"2026-06-20T22:00:32.601Z","dependent_packages_count":1,"downloads":9237,"downloads_period":"last-month","dependent_repos_count":4,"rankings":{"downloads":5.162186306222896,"dependent_repos_count":7.520464010314741,"dependent_packages_count":4.732581140073995,"stargazers_count":2.8033484812245875,"forks_count":4.042425378702368,"docker_downloads_count":1.5573022574283184,"average":4.303051262327817},"purl":"pkg:pypi/pubmed-parser","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/pubmed-parser","docker_dependents_count":1,"docker_downloads_count":5783,"usage_url":"https://repos.ecosyste.ms/usage/pypi/pubmed-parser","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/pubmed-parser/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2026-06-10T17:00:51.320Z","issues_count":89,"pull_requests_count":76,"avg_time_to_close_issue":21167550.694444444,"avg_time_to_close_pull_request":1017490.7826086957,"issues_closed_count":72,"pull_requests_closed_count":69,"pull_request_authors_count":31,"issue_authors_count":55,"avg_comments_per_issue":2.8202247191011236,"avg_comments_per_pull_request":0.8552631578947368,"merged_pull_requests_count":60,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.3333333333333333,"past_year_avg_comments_per_pull_request":1.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/issues","maintainers":[{"login":"titipata","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/titipata"},{"login":"Michael-E-Rose","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Michael-E-Rose"},{"login":"bluenex","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bluenex"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pubmed-parser/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pubmed-parser/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pubmed-parser/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pubmed-parser/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pubmed-parser/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pubmed-parser/codemeta","maintainers":[{"uuid":"titipata","login":"titipata","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/titipata/","role":null,"created_at":"2022-11-25T15:43:45.032Z","updated_at":"2022-11-25T15:43:45.032Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/titipata/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":891310,"maintainers_count":381813,"namespaces_count":0,"keywords_count":289179,"github":"pypi","metadata":{"funded_packages_count":54301},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2026-06-10T05:13:28.296Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":633987,"full_name":"titipata/pubmed_parser","default_branch":"master","total_commits":322,"total_committers":39,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":8.256410256410257,"dds":0.68944099378882,"past_year_total_commits":1,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":1.0,"past_year_dds":0.0,"last_synced_at":"2026-06-20T22:05:00.958Z","last_synced_commit":"b493fb9abd8e43ff031b884a89a900ebf5d06e86","created_at":"2023-03-09T08:30:46.732Z","updated_at":"2026-06-20T22:02:57.294Z","committers":[{"name":"titipata","email":"titipat.a@u.northwestern.edu","login":null,"count":100},{"name":"titipata","email":"my.titipat@gmail.com","login":"titipata","count":94},{"name":"Nils Herrmann","email":"nils18@live.com.mx","login":"nils-herrmann","count":24},{"name":"Ray Pereda","email":"rpereda@genesisrg.com","login":"raypereda-gr","count":11},{"name":"Daniel Acuna","email":"deacuna@syr.edu","login":"daniel-acuna","count":10},{"name":"Michael E. Rose","email":"Michael.Ernst.Rose@gmail.com","login":"Michael-E-Rose","count":9},{"name":"tulakann","email":"tulakan.r@gmail.com","login":"bluenex","count":8},{"name":"Daniel Acuna","email":"daniel.acuna@northwestern.edu","login":null,"count":7},{"name":"titipata","email":"titipata@allenai.org","login":null,"count":7},{"name":"Simon Wörpel","email":"simon.woerpel@medienrevolte.de","login":"simonwoerpel","count":6},{"name":"Ted Cybulski","email":"tcybulski@gmail.com","login":"tcyb","count":6},{"name":"Tommaso Leonardi","email":"tom@itm6.xyz","login":"tleonardi","count":4},{"name":"Kevin Henner","email":"kjhenner","login":"kjhenner","count":3},{"name":"Daniel Mietchen","email":"daniel.mietchen@googlemail.com","login":"Daniel-Mietchen","count":2},{"name":"Julien Tourille","email":"julien.tourille@gmail.com","login":"jtourille","count":2},{"name":"Mark A. Jensen","email":"maj-git@fortinbras.us","login":"majensen","count":2},{"name":"TariqAHassan","email":"tariqaahassan@gmail.com","login":"TariqAHassan","count":2},{"name":"Tiansu","email":"tiansuyu2020@icloud.com","login":"TiansuYu","count":2},{"name":"jim","email":"zyi103@syr.edu","login":"jimzijun","count":2},{"name":"patrusso2","email":"patrusso2@gmail.com","login":"patrusso2","count":2},{"name":"yak1r","email":"yakir.regev@gmail.com","login":"yak1r","count":1},{"name":"tanganyao","email":"tanganyao872175199@163.com","login":"tanganyao","count":1},{"name":"ianlongden","email":"ianlongden@morgan.harvard.edu","login":"ianlongden","count":1},{"name":"Ray Pereda","email":"raypereda@Genesiss-MBP.home","login":null,"count":1},{"name":"Ubuntu","email":"ubuntu@ip-172-31-11-208.us-west-2.compute.internal","login":null,"count":1},{"name":"titipata","email":"titipata@u.northwestern.edu","login":null,"count":1},{"name":"iacopo","email":"iacopy","login":"iacopy","count":1},{"name":"ZhangWoW123","email":"113924100+ZhangWoW123","login":"ZhangWoW123","count":1},{"name":"Vincent Batts","email":"vbatts@hashbangbash.com","login":"vbatts","count":1},{"name":"Thomas Pan","email":"thomascpan@gmail.com","login":"thomascpan","count":1},{"name":"The Gitter Badger","email":"badger@gitter.im","login":"gitter-badger","count":1},{"name":"Sean Davis","email":"seandavi@gmail.com","login":"seandavi","count":1},{"name":"Nicolas Ford","email":"univnf@gmail.com","login":"nicford","count":1},{"name":"Kristen Thyng","email":"kthyng@gmail.com","login":"kthyng","count":1},{"name":"Ian Johnson","email":"enjalot@gmail.com","login":"enjalot","count":1},{"name":"Hydrogen Plus Time","email":"hydrogenplustime@gmail.com","login":"H-Plus-Time","count":1},{"name":"Grivaz","email":"33332500+grivaz","login":"grivaz","count":1},{"name":"Ethan Drower","email":"ethandrower@gmail.com","login":"ethandrower","count":1},{"name":"David Brandfonbrener","email":"david.brandfonbrener@yale.edu","login":"davidbrandfonbrener","count":1}],"past_year_committers":[{"name":"ianlongden","email":"ianlongden@morgan.harvard.edu","login":"ianlongden","count":1}],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-22T00:00:10.186Z","repositories_count":6266062,"commits_count":874697496,"contributors_count":35091139,"owners_count":1170207,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"titipata/pubmed_parser","html_url":"https://github.com/titipata/pubmed_parser","last_synced_at":"2026-06-10T17:00:51.320Z","status":"active","issues_count":89,"pull_requests_count":76,"avg_time_to_close_issue":21167550.694444444,"avg_time_to_close_pull_request":1017490.7826086957,"issues_closed_count":72,"pull_requests_closed_count":69,"pull_request_authors_count":31,"issue_authors_count":55,"avg_comments_per_issue":2.8202247191011236,"avg_comments_per_pull_request":0.8552631578947368,"merged_pull_requests_count":60,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.3333333333333333,"past_year_avg_comments_per_pull_request":1.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T20:43:37.243Z","updated_at":"2026-06-10T17:00:51.320Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/titipata%2Fpubmed_parser/issues","issue_labels_count":{"table":{"bug":23,"enhancement":11,"question":5,"help wanted":4,"invalid":2,"feature request":1,"duplicate":1}},"pull_request_labels_count":{"table":{}},"issue_author_associations_count":{"table":{"NONE":56,"CONTRIBUTOR":17,"OWNER":14,"COLLABORATOR":2}},"pull_request_author_associations_count":{"table":{"CONTRIBUTOR":60,"NONE":11,"OWNER":4,"COLLABORATOR":1}},"issue_authors":{"table":{"titipata":14,"deakkon":6,"nils-herrmann":5,"tleonardi":5,"uludag":2,"ghost":2,"shrimonmuke0202":2,"ZhangWoW123":2,"Michael-E-Rose":2,"callebalik":2,"octotus":2,"qm-intel":2,"pidugusundeep":1,"soupstandstop":1,"schnobi1990":1,"RengarAndKhz":1,"wzhou122":1,"robinweisenburger":1,"RudrakshTuwani":1,"mazzespazze":1,"jtourille":1,"krishxmatta":1,"FrancescoCasalegno":1,"seandavi":1,"srishti-git1110":1,"mattyding":1,"sublimotion":1,"rajasankar":1,"hdabaghyan":1,"wildwhip":1,"0BN0":1,"ethandrower":1,"scm1210":1,"jonghyunlee1993":1,"TiansuYu":1,"thomascpan":1,"MattYoon":1,"pseudomonas":1,"zhao-zy15":1,"dsdoermann":1,"JIBINJOHNV":1,"alonasorochynska":1,"oblodgett":1,"charliejeynes":1,"chengkun-wu":1,"lixiangchun":1,"sakrifor":1,"chungimungi":1,"jjgreen12":1,"TariqAHassan":1,"MatthewDeitz":1,"rbf22":1,"musiccccc":1,"huminpurin":1,"grabear":1}},"pull_request_authors":{"table":{"nils-herrmann":31,"titipata":4,"kjhenner":3,"jtourille":2,"enjalot":2,"thomascpan":2,"tleonardi":2,"iacopy":2,"zyi103":2,"Daniel-Mietchen":2,"ZhangWoW123":2,"raypereda":2,"patrusso2":2,"simonwoerpel":1,"soupstandstop":1,"TiansuYu":1,"JovanVeljanoski":1,"grivaz":1,"bluenex":1,"kthyng":1,"tanganyao":1,"ErisonChen":1,"nicford":1,"vbatts":1,"seandavi":1,"majensen":1,"yak1r":1,"hdabaghyan":1,"TariqAHassan":1,"raypereda-gr":1,"ethandrower":1}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-14T00:00:24.059Z","repositories_count":14804457,"issues_count":33161443,"pull_requests_count":109317906,"authors_count":11305997,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{"bug":1}},"past_year_pull_request_labels_count":{"table":{}},"past_year_issue_author_associations_count":{"table":{"NONE":2,"CONTRIBUTOR":1}},"past_year_pull_request_author_associations_count":{"table":{"NONE":2}},"past_year_issue_authors":{"table":{"hdabaghyan":1,"seandavi":1,"wzhou122":1}},"past_year_pull_request_authors":{"table":{"ErisonChen":1,"hdabaghyan":1}},"maintainers":[{"table":{"login":"titipata","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/titipata"}},{"table":{"login":"Michael-E-Rose","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Michael-E-Rose"}},{"table":{"login":"bluenex","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bluenex"}}],"active_maintainers":[]}},"events":{"total":{"PullRequestEvent":10,"ForkEvent":10,"IssuesEvent":10,"WatchEvent":112,"IssueCommentEvent":23,"PushEvent":19,"PullRequestReviewEvent":5,"PullRequestReviewCommentEvent":1},"last_year":{"ForkEvent":3,"IssuesEvent":2,"WatchEvent":28,"IssueCommentEvent":3}},"keywords":["article","doi","medline-xml","nlp","parse","parser","pmid","pubmed-central","pubmed-parser","python","xml"],"dependencies":[{"ecosystem":"pypi","filepath":"docs/doc_requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-26T13:30:55.387Z","updated_at":"2022-08-26T13:30:55.387Z","repository_link":"https://github.com/titipata/pubmed_parser/blob/master/docs/doc_requirements.txt","dependencies":[{"id":2820021293,"package_name":"sphinx_rtd_theme","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021294,"package_name":"sphinx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021295,"package_name":"sphinx-gallery","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-26T13:30:55.462Z","updated_at":"2022-08-26T13:30:55.462Z","repository_link":"https://github.com/titipata/pubmed_parser/blob/master/requirements.txt","dependencies":[{"id":2820021442,"package_name":"lxml","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021443,"package_name":"unidecode","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021444,"package_name":"requests","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021445,"package_name":"six","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021446,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021447,"package_name":"pytest","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021448,"package_name":"pytest-cov","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-08-26T13:30:55.583Z","updated_at":"2022-08-26T13:30:55.583Z","repository_link":"https://github.com/titipata/pubmed_parser/blob/master/setup.py","dependencies":[{"id":2820021617,"package_name":"lxml","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021618,"package_name":"unidecode","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021619,"package_name":"requests","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021620,"package_name":"six","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021621,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021622,"package_name":"pytest","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2820021623,"package_name":"pytest-cov","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":19.909206884334907,"created_at":"2025-04-11T10:22:25.318Z","updated_at":"2026-06-22T23:00:31.245Z","avatar_url":"https://github.com/titipata.png","language":"Python","codemeta":null,"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/358315","html_url":"https://summary.ecosyste.ms/projects/358315"}