{"id":357991,"url":"https://github.com/ivadomed/ivadomed","last_synced_at":"2026-06-22T23:00:33.890Z","repository":{"id":37254779,"uuid":"118849292","full_name":"ivadomed/ivadomed","owner":"ivadomed","description":"Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.","archived":false,"fork":false,"pushed_at":"2025-05-15T18:59:44.000Z","size":140713,"stargazers_count":163,"open_issues_count":301,"forks_count":147,"subscribers_count":10,"default_branch":"master","last_synced_at":"2026-06-08T16:05:53.997Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://ivadomed.org","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ivadomed.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGES.md","contributing":"CONTRIBUTING.rst","funding":".github/FUNDING.yml","license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null},"funding":{"github":"neuropoly"}},"created_at":"2018-01-25T02:12:52.000Z","updated_at":"2026-05-16T00:24:09.000Z","dependencies_parsed_at":"2024-01-09T20:26:28.383Z","dependency_job_id":"7f614471-1b30-4760-be88-fcb5706597a1","html_url":"https://github.com/ivadomed/ivadomed","commit_stats":null,"previous_names":["neuropoly/ivadomed"],"tags_count":35,"template":false,"template_full_name":null,"purl":"pkg:github/ivadomed/ivadomed","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ivadomed%2Fivadomed","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ivadomed%2Fivadomed/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ivadomed%2Fivadomed/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ivadomed%2Fivadomed/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ivadomed","download_url":"https://codeload.github.com/ivadomed/ivadomed/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ivadomed%2Fivadomed/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34256188,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-12T02:00:06.859Z","response_time":109,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ivadomed","name":"ivadomed","uuid":"67157284","kind":"organization","description":"Integrated framework for medical image analysis with deep learning.","email":null,"website":"https://ivadomed.org","location":"Canada","twitter":"ivadomed","company":null,"icon_url":"https://avatars.githubusercontent.com/u/67157284?v=4","repositories_count":23,"last_synced_at":"2023-03-04T15:14:37.263Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ivadomed","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T20:15:36.410Z","updated_at":"2023-03-04T15:14:37.347Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ivadomed","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ivadomed/repositories"},"packages":[],"commits":{"id":9625372,"full_name":"ivadomed/ivadomed","default_branch":"master","total_commits":3586,"total_committers":35,"total_bot_commits":1,"total_bot_committers":1,"mean_commits":102.45714285714286,"dds":0.5114333519241494,"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2026-06-20T22:05:01.677Z","last_synced_commit":"161304dc93e290d1e17cdf8afa7d7aa63fed368d","created_at":"2025-04-11T11:23:45.156Z","updated_at":"2026-06-20T22:04:06.841Z","committers":[{"name":"charleygros","email":"charley.gros@gmail.com","login":"charleygros","count":1752},{"name":"andreanne-lemay","email":"andreanne.lemay@polymtl.ca","login":"andreanne-lemay","count":676},{"name":"Julien Cohen-Adad","email":"jcohen@polymtl.ca","login":"jcohenadad","count":239},{"name":"lrouhier","email":"lucas.rouhier@telecom-paristech.fr","login":"lrouhier","count":223},{"name":"olivier","email":"oli_ch@hotmail.com","login":"olix86","count":210},{"name":"AnBucquet","email":"bucquet@eurecom.fr","login":null,"count":104},{"name":"cakester","email":"hanna.ma@motioncorrect.com","login":"cakester","count":67},{"name":"mariehbourget","email":"54086142+mariehbourget","login":"mariehbourget","count":57},{"name":"ValentineLL","email":"valentinell@ella.neuro.polymtl.ca","login":"Valentine-LL","count":36},{"name":"Yang Ding","email":"yang.ding@motioncorrect.com","login":"dyt811","count":31},{"name":"Alexandru Jora","email":"alexandru@jora.ca","login":"Drulex","count":26},{"name":"Ainsleigh Hill","email":"ainsleighhill@gmail.com","login":"ahill187","count":25},{"name":"Nick","email":"nick.guenther@polymtl.ca","login":"kousu","count":21},{"name":"Christian S. Perone","email":"christian.perone@gmail.com","login":"perone","count":17},{"name":"Giselle Martel","email":"32080571+gisellemartel","login":"gisellemartel","count":12},{"name":"Yuan Wang","email":"35284474+konantian","login":"konantian","count":12},{"name":"Joshua Newton","email":"joshuacwnewton@gmail.com","login":"joshuacwnewton","count":11},{"name":"BUCQUET Anthime","email":"32641764+AnBucquet","login":"AnBucquet","count":11},{"name":"Kanishk Kalra","email":"36276423+kanishk16","login":"kanishk16","count":9},{"name":"Uzay Macar","email":"uzay.macar@gmail.com","login":"uzaymacar","count":8},{"name":"Srishti","email":"srishtiyadav0807@gmail.com","login":"copperwiring","count":6},{"name":"Olivier Vincent","email":"ovincent_admin@pass.neuro.polymtl.ca","login":null,"count":6},{"name":"Mathieu Boudreau, PhD","email":"emb6150@gmail.com","login":"mathieuboudreau","count":5},{"name":"Konstantinos","email":"knasiwtis@hotmail.com","login":"mpompolas","count":4},{"name":"Naga Karthik","email":"53445351+naga-karthik","login":"naga-karthik","count":4},{"name":"Alexandru Foias","email":"alexfoias","login":"alexfoias","count":3},{"name":"bsauty","email":"42009161+bsauty","login":"bsauty","count":3},{"name":"Enoch Tetteh","email":"cutetetteh@gmail.com","login":"etetteh","count":1},{"name":"Fernando França","email":"fernandopmgf@al.insper.edu.br","login":"Kcpf","count":1},{"name":"Jeff","email":"nekohayo@gmail.com","login":"nekohayo","count":1},{"name":"Nishka Katoch","email":"95979106+Nish228","login":"Nish228","count":1},{"name":"Sohaib Kaidali","email":"kaidalisohaib@gmail.com","login":"kaidalisohaib","count":1},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":1},{"name":"leandervaneekelen","email":"47320151+leandervaneekelen","login":"leandervaneekelen","count":1},{"name":"Étienne Boucher","email":"etienneboucher@hotmail.ca","login":"lifetheater57","count":1}],"past_year_committers":[],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/ivadomed%2Fivadomed/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-22T00:00:10.186Z","repositories_count":6266062,"commits_count":874697496,"contributors_count":35091139,"owners_count":1170207,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"ivadomed/ivadomed","html_url":"https://github.com/ivadomed/ivadomed","last_synced_at":"2026-04-20T16:03:50.276Z","status":"active","issues_count":65,"pull_requests_count":182,"avg_time_to_close_issue":9427448.315789474,"avg_time_to_close_pull_request":5964467.946107784,"issues_closed_count":19,"pull_requests_closed_count":167,"pull_request_authors_count":27,"issue_authors_count":12,"avg_comments_per_issue":3.1846153846153844,"avg_comments_per_pull_request":3.412087912087912,"merged_pull_requests_count":149,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T08:09:13.642Z","updated_at":"2026-04-20T16:03:50.276Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ivadomed%2Fivadomed","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ivadomed%2Fivadomed/issues","issue_labels_count":{"table":{"documentation":11,"bug":6,"card:DESIGN_DISCUSSION":6,"feature":5,"wandb":4,"enhancement":3,"priority:high":3,"Good intership project":2,"question":1,"refactoring":1,"help wanted":1}},"pull_request_labels_count":{"table":{"documentation":39,"enhancement":33,"bug":29,"refactoring":25,"feature":14,"testing":7,"installation":7,"CI":6,"maintenance":6,"deep learning":5,"dependencies":4,"Ready for review":4,"priority:medium":4,"priority:high":4,"card:DESIGN_DISCUSSION":2,"draft":2,"ivadomed":1,"architecture":1,"imaging":1,"wandb":1}},"issue_author_associations_count":{"table":{"MEMBER":52,"CONTRIBUTOR":7,"NONE":6}},"pull_request_author_associations_count":{"table":{"MEMBER":100,"CONTRIBUTOR":75,"NONE":4,"COLLABORATOR":3}},"issue_authors":{"table":{"jcohenadad":42,"naga-karthik":4,"joshuacwnewton":4,"mathieuboudreau":3,"mariehbourget":2,"uzaymacar":2,"hermancollin":2,"kiristern":2,"taimast":1,"dbsi-pinkman":1,"zwb0":1,"chennyyuee":1}},"pull_request_authors":{"table":{"andreanne-lemay":34,"mariehbourget":18,"ahill187":16,"jcohenadad":15,"cakester":15,"joshuacwnewton":14,"charleygros":13,"kanishk16":8,"mathieuboudreau":8,"lrouhier":6,"kaidalisohaib":5,"gisellemartel":5,"kousu":4,"mpompolas":3,"AshkanTaghipour":2,"alexfoias":2,"konantian":2,"dyt811":2,"olix86":2,"gbazad93":1,"entiri":1,"Kcpf":1,"titaiwangms":1,"Drulex":1,"uzaymacar":1,"naga-karthik":1,"leandervaneekelen":1}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-06-06T00:00:10.330Z","repositories_count":14767567,"issues_count":33464211,"pull_requests_count":110178752,"authors_count":11294227,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{}},"past_year_pull_request_labels_count":{"table":{}},"past_year_issue_author_associations_count":{"table":{}},"past_year_pull_request_author_associations_count":{"table":{}},"past_year_issue_authors":{"table":{}},"past_year_pull_request_authors":{"table":{}},"maintainers":[{"table":{"login":"jcohenadad","count":57,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jcohenadad"}},{"table":{"login":"andreanne-lemay","count":34,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/andreanne-lemay"}},{"table":{"login":"mariehbourget","count":20,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mariehbourget"}},{"table":{"login":"joshuacwnewton","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/joshuacwnewton"}},{"table":{"login":"charleygros","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/charleygros"}},{"table":{"login":"naga-karthik","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/naga-karthik"}},{"table":{"login":"mpompolas","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mpompolas"}},{"table":{"login":"konantian","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/konantian"}},{"table":{"login":"dyt811","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dyt811"}},{"table":{"login":"entiri","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/entiri"}}],"active_maintainers":[]}},"events":{"total":{"PullRequestEvent":5,"IssuesEvent":5,"WatchEvent":11,"IssueCommentEvent":65,"PushEvent":6,"PullRequestReviewCommentEvent":1,"GollumEvent":1},"last_year":{"WatchEvent":4}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-07-12T16:14:52.126Z","updated_at":"2022-07-12T16:14:52.126Z","repository_link":"https://github.com/ivadomed/ivadomed/blob/master/requirements.txt","dependencies":[{"id":166269398,"package_name":"pyparsing","ecosystem":"pypi","requirements":"\u003c3,\u003e=2.0.2","direct":true,"kind":"runtime","optional":false},{"id":166269399,"package_name":"csv-diff","ecosystem":"pypi","requirements":"\u003e=1.0","direct":true,"kind":"runtime","optional":false},{"id":166269400,"package_name":"loguru","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":166269401,"package_name":"joblib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":166269402,"package_name":"matplotlib","ecosystem":"pypi","requirements":"\u003e=3.3.0","direct":true,"kind":"runtime","optional":false},{"id":166269403,"package_name":"nibabel","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":166269404,"package_name":"onnxruntime","ecosystem":"pypi","requirements":"==1.7.0","direct":true,"kind":"runtime","optional":false},{"id":166269405,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":166269406,"package_name":"pillow","ecosystem":"pypi","requirements":"\u003e=7.0.0","direct":true,"kind":"runtime","optional":false},{"id":166269407,"package_name":"pybids","ecosystem":"pypi","requirements":"\u003e=0.14.0","direct":true,"kind":"runtime","optional":false},{"id":166269408,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=0.20.3","direct":true,"kind":"runtime","optional":false},{"id":166269409,"package_name":"scikit-image","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":166269410,"package_name":"seaborn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":166269411,"package_name":"tensorboard","ecosystem":"pypi","requirements":"\u003e=1.15.0","direct":true,"kind":"runtime","optional":false},{"id":166269412,"package_name":"tqdm","ecosystem":"pypi","requirements":"\u003e=4.30","direct":true,"kind":"runtime","optional":false},{"id":166269413,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":166269414,"package_name":"torchio","ecosystem":"pypi","requirements":"\u003e=0.18.68","direct":true,"kind":"runtime","optional":false},{"id":166269415,"package_name":"torch","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":166269416,"package_name":"torchvision","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":166269417,"package_name":"wandb","ecosystem":"pypi","requirements":"\u003e=0.12.11","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pre-commit.yml","sha":null,"kind":"manifest","created_at":"2023-02-12T20:15:58.470Z","updated_at":"2023-02-12T20:15:58.470Z","repository_link":"https://github.com/ivadomed/ivadomed/blob/master/.github/workflows/pre-commit.yml","dependencies":[{"id":7595868551,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7595868552,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7595868553,"package_name":"actions/cache","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/publish_package.yml","sha":null,"kind":"manifest","created_at":"2023-02-12T20:15:58.557Z","updated_at":"2023-02-12T20:15:58.557Z","repository_link":"https://github.com/ivadomed/ivadomed/blob/master/.github/workflows/publish_package.yml","dependencies":[{"id":7595868718,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7595868719,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7595868720,"package_name":"softprops/action-gh-release","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7595868721,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"release/v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/run_tests.yml","sha":null,"kind":"manifest","created_at":"2023-02-12T20:15:58.615Z","updated_at":"2023-02-12T20:15:58.615Z","repository_link":"https://github.com/ivadomed/ivadomed/blob/master/.github/workflows/run_tests.yml","dependencies":[{"id":7595868726,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7595868727,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/run_tests_dummy.yml","sha":null,"kind":"manifest","created_at":"2023-09-27T22:23:03.821Z","updated_at":"2023-09-27T22:23:03.821Z","repository_link":"https://github.com/ivadomed/ivadomed/blob/master/.github/workflows/run_tests_dummy.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2023-09-27T22:23:04.213Z","updated_at":"2023-09-27T22:23:04.213Z","repository_link":"https://github.com/ivadomed/ivadomed/blob/master/setup.py","dependencies":[]},{"ecosystem":"conda","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2024-01-09T20:26:26.909Z","updated_at":"2024-01-09T20:26:26.909Z","repository_link":"https://github.com/ivadomed/ivadomed/blob/master/environment.yml","dependencies":[{"id":15524971960,"package_name":"pip","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":15524971961,"package_name":"python","ecosystem":"conda","requirements":"\u003e=3.7,\u003c3.9","direct":true,"kind":"runtime","optional":false}]}],"score":9.69523261371567,"created_at":"2025-04-11T10:21:29.660Z","updated_at":"2026-06-22T23:00:33.890Z","avatar_url":"https://github.com/ivadomed.png","language":"Python","codemeta":null,"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/357991","html_url":"https://summary.ecosyste.ms/projects/357991"}