{"id":357409,"url":"https://github.com/Xia-Yijie/Xponge","last_synced_at":"2026-08-22T03:01:11.196Z","repository":{"id":37684583,"uuid":"489697916","full_name":"Xia-Yijie/Xponge","owner":"Xia-Yijie","description":"A lightweight and easy to customize python package to perform pre- and post-processing of molecular modelling","archived":false,"fork":false,"pushed_at":"2022-11-26T03:48:12.000Z","size":6499,"stargazers_count":6,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2026-07-28T15:04:55.211Z","etag":null,"topics":["molecular-dynamics","molecular-modelling"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Xia-Yijie.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-05-07T14:36:05.000Z","updated_at":"2026-07-20T08:59:25.000Z","dependencies_parsed_at":"2025-04-14T14:55:28.943Z","dependency_job_id":"a1f6986f-feb0-444c-aef4-1740b8c2216f","html_url":"https://github.com/Xia-Yijie/Xponge","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/Xia-Yijie/Xponge","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Xia-Yijie","download_url":"https://codeload.github.com/Xia-Yijie/Xponge/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":36083087,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-07-20T02:08:10.276Z","status":"online","status_checked_at":"2026-07-30T02:00:05.956Z","response_time":106,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Xia-Yijie","name":"Xia-Yijie","uuid":"70470814","kind":"user","description":"Alternative account @SummerJustNice","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/70470814?v=4","repositories_count":2,"last_synced_at":"2023-03-05T15:28:23.767Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Xia-Yijie","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T18:30:17.489Z","updated_at":"2023-03-05T15:28:23.816Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Xia-Yijie","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Xia-Yijie/repositories"},"packages":[{"id":336397,"name":"xponge","ecosystem":"pypi","description":"A Python package to perform pre- and post-processing of molecular simulations","homepage":"https://gitee.com/gao_hyp_xyj_admin/xponge","licenses":"other","normalized_licenses":["Other"],"repository_url":"https://github.com/xia-yijie/xponge","keywords_array":[],"namespace":null,"versions_count":106,"first_release_published_at":"2021-11-24T13:02:11.000Z","latest_release_published_at":"2024-01-24T14:12:40.000Z","latest_release_number":"1.4.4","last_synced_at":"2026-08-20T02:36:37.311Z","created_at":"2022-04-06T12:45:14.815Z","updated_at":"2026-08-20T09:58:54.888Z","registry_url":"https://pypi.org/project/xponge/","install_command":"pip install xponge --index-url https://pypi.org/simple","documentation_url":"https://xponge.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 5 - Production/Stable","Operating System :: OS Independent","Programming Language :: Python :: 3 :: Only"],"normalized_name":"xponge","project_status":null},"repo_metadata":{"id":37684583,"uuid":"489697916","full_name":"Xia-Yijie/Xponge","owner":"Xia-Yijie","description":"A lightweight and easy to customize python package to perform pre- and post-processing of molecular modelling","archived":false,"fork":false,"pushed_at":"2022-11-26T03:48:12.000Z","size":6499,"stargazers_count":6,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2026-08-12T22:41:04.641Z","etag":null,"topics":["molecular-dynamics","molecular-modelling"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Xia-Yijie.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-05-07T14:36:05.000Z","updated_at":"2026-07-20T08:59:25.000Z","dependencies_parsed_at":"2025-04-14T14:55:28.943Z","dependency_job_id":"a1f6986f-feb0-444c-aef4-1740b8c2216f","html_url":"https://github.com/Xia-Yijie/Xponge","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/Xia-Yijie/Xponge","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Xia-Yijie","download_url":"https://codeload.github.com/Xia-Yijie/Xponge/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":36774238,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-08-06T04:43:03.162Z","status":"online","status_checked_at":"2026-08-19T02:00:06.185Z","response_time":54,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"Xia-Yijie","name":"Xia-Yijie","uuid":"70470814","kind":"user","description":"Alternative account @SummerJustNice","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/70470814?v=4","repositories_count":2,"last_synced_at":"2023-03-05T15:28:23.767Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Xia-Yijie","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T18:30:17.489Z","updated_at":"2023-03-05T15:28:23.816Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Xia-Yijie","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Xia-Yijie/repositories"},"tags":[{"name":"v1.2.6.8","sha":"6ae515aaf23c7341777c278b3f54fbf1b2bd391f","kind":"commit","published_at":"2022-09-13T03:46:34.000Z","download_url":"https://codeload.github.com/Xia-Yijie/Xponge/tar.gz/v1.2.6.8","html_url":"https://github.com/Xia-Yijie/Xponge/releases/tag/v1.2.6.8","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/Xia-Yijie/Xponge@v1.2.6.8","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/tags/v1.2.6.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/tags/v1.2.6.8/manifests"}]},"repo_metadata_updated_at":"2026-08-20T09:58:54.887Z","dependent_packages_count":0,"downloads":67,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":13.053820879622293,"dependent_repos_count":21.627614287651376,"dependent_packages_count":10.069287946036377,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":14.916907704436682},"purl":"pkg:pypi/xponge","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/xponge","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/xponge","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/xponge/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2026-08-20T02:00:57.659Z","issues_count":13,"pull_requests_count":16,"avg_time_to_close_issue":1696431.3333333333,"avg_time_to_close_pull_request":58864.1875,"issues_closed_count":12,"pull_requests_closed_count":16,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":2.3846153846153846,"avg_comments_per_pull_request":0.0625,"merged_pull_requests_count":16,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/issues","maintainers":[{"login":"Xia-Yijie","count":19,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Xia-Yijie"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/xponge/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/xponge/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/xponge/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/xponge/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/xponge/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/xponge/codemeta","maintainers":[{"uuid":"yijiexia","login":"yijiexia","name":null,"email":null,"url":null,"packages_count":15,"html_url":"https://pypi.org/user/yijiexia/","role":null,"created_at":"2022-11-14T17:55:51.826Z","updated_at":"2022-11-14T17:55:51.826Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/yijiexia/packages"},{"uuid":"youmans","login":"youmans","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/youmans/","role":"Maintainer","created_at":"2026-04-24T17:06:51.881Z","updated_at":"2026-04-24T17:06:51.881Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/youmans/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":929795,"maintainers_count":399334,"namespaces_count":0,"keywords_count":311282,"github":"pypi","metadata":{"funded_packages_count":58148,"rate_limit":2},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2026-08-20T05:05:11.122Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":9625160,"full_name":"Xia-Yijie/Xponge","default_branch":"master","total_commits":226,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":75.33333333333333,"dds":0.3584070796460177,"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2026-08-20T02:01:42.813Z","last_synced_commit":"5ecd73b3b047e3b43556927d6759551d6c41e3b3","created_at":"2025-04-11T11:12:35.573Z","updated_at":"2026-08-20T02:01:42.258Z","committers":[{"name":"Yijie Xia","email":"yijiexia@pku.edu.cn","login":"SummerJustNice","count":145},{"name":"xiayijie","email":"yijie@isrc.iscas.ac.cn","login":"XiaYijie2022","count":51},{"name":"Xia-Yijie","email":"70470814+Xia-Yijie","login":"Xia-Yijie","count":30}],"past_year_committers":[],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-08-21T00:00:17.498Z","repositories_count":6765257,"commits_count":980484613,"contributors_count":41339597,"owners_count":1362143,"committers_count":3356556,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"Xia-Yijie/Xponge","html_url":"https://github.com/Xia-Yijie/Xponge","last_synced_at":"2026-08-21T02:31:59.586Z","status":null,"issues_count":13,"pull_requests_count":16,"avg_time_to_close_issue":1696431.3333333333,"avg_time_to_close_pull_request":58864.1875,"issues_closed_count":12,"pull_requests_closed_count":16,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":2.3846153846153846,"avg_comments_per_pull_request":0.0625,"merged_pull_requests_count":16,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-04-11T11:12:35.845Z","updated_at":"2026-08-21T02:31:59.586Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Xia-Yijie%2FXponge/issues","issue_labels_count":{"table":{"documentation":5,"enhancement":5,"bug":3,"question":1}},"pull_request_labels_count":{"table":{}},"issue_author_associations_count":{"table":{"NONE":10,"OWNER":3}},"pull_request_author_associations_count":{"table":{"OWNER":16}},"issue_authors":{"table":{"hmacdope":5,"ojeda-e":5,"Xia-Yijie":3}},"pull_request_authors":{"table":{"Xia-Yijie":16}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-08-22T00:00:08.916Z","repositories_count":16218677,"issues_count":41876269,"pull_requests_count":133463340,"authors_count":11491042,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{}},"past_year_pull_request_labels_count":{"table":{}},"past_year_issue_author_associations_count":{"table":{}},"past_year_pull_request_author_associations_count":{"table":{}},"past_year_issue_authors":{"table":{}},"past_year_pull_request_authors":{"table":{}},"maintainers":[{"table":{"login":"Xia-Yijie","count":19,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Xia-Yijie"}}],"active_maintainers":[]}},"events":{"total":{"WatchEvent":2},"last_year":{"WatchEvent":2}},"keywords":["molecular-dynamics","molecular-modelling"],"dependencies":[{"ecosystem":"pypi","filepath":"Xponge.egg-info/requires.txt","sha":null,"kind":"manifest","created_at":"2022-08-11T05:40:11.007Z","updated_at":"2022-08-11T05:40:11.007Z","repository_link":"https://github.com/Xia-Yijie/Xponge/blob/master/Xponge.egg-info/requires.txt","dependencies":[{"id":1172108138,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-08-11T05:40:11.033Z","updated_at":"2022-08-11T05:40:11.033Z","repository_link":"https://github.com/Xia-Yijie/Xponge/blob/master/setup.py","dependencies":[{"id":1172108139,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/paper.yml","sha":null,"kind":"manifest","created_at":"2025-04-14T14:55:27.189Z","updated_at":"2025-04-14T14:55:27.189Z","repository_link":"https://github.com/Xia-Yijie/Xponge/blob/master/.github/workflows/paper.yml","dependencies":[{"id":22683760115,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22683760116,"package_name":"openjournals/openjournals-draft-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":22683760117,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test.yml","sha":null,"kind":"manifest","created_at":"2025-04-14T14:55:27.862Z","updated_at":"2025-04-14T14:55:27.862Z","repository_link":"https://github.com/Xia-Yijie/Xponge/blob/master/.github/workflows/test.yml","dependencies":[{"id":22683760127,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22683760128,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22683760129,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]}],"score":7.293017679772783,"created_at":"2025-04-11T10:19:46.776Z","updated_at":"2026-08-22T03:01:11.196Z","avatar_url":"https://github.com/Xia-Yijie.png","language":"Python","codemeta":null,"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/357409","html_url":"https://summary.ecosyste.ms/projects/357409"}