{"id":356573,"url":"https://github.com/suchanek/proteusPy","last_synced_at":"2026-06-20T23:02:22.695Z","repository":{"id":64700352,"uuid":"575657091","full_name":"suchanek/proteusPy","owner":"suchanek","description":"A package for the modeling and analysis of proteins of known structure","archived":false,"fork":false,"pushed_at":"2026-04-16T01:48:48.000Z","size":687163,"stargazers_count":2,"open_issues_count":3,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2026-04-28T04:35:08.327Z","etag":null,"topics":["biophysics","structural"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/suchanek.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-12-08T02:17:29.000Z","updated_at":"2026-04-16T01:48:52.000Z","dependencies_parsed_at":"2025-06-05T02:41:05.916Z","dependency_job_id":null,"html_url":"https://github.com/suchanek/proteusPy","commit_stats":{"total_commits":392,"total_committers":2,"mean_commits":196.0,"dds":"0.0025510204081632404","last_synced_commit":"bdfc795b80ec401627fe286b2cb6a51c903f6e4d"},"previous_names":[],"tags_count":93,"template":false,"template_full_name":null,"purl":"pkg:github/suchanek/proteusPy","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/suchanek","download_url":"https://codeload.github.com/suchanek/proteusPy/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32759584,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-07T02:14:30.463Z","status":"ssl_error","status_checked_at":"2026-05-07T02:14:29.405Z","response_time":62,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"suchanek","name":"Eric G. Suchanek, Ph.D.","uuid":"4127770","kind":"user","description":"Biophysicist by training, computer scientist by necessity, astronomer by compulsion and artist by will. Lover of life, living the dream with Paula and Kirra.","email":"","website":null,"location":"Cincinnati","twitter":null,"company":"Flux-Frontiers","icon_url":"https://avatars.githubusercontent.com/u/4127770?u=277bf83a78073d92bb8139d707404eac2923d965\u0026v=4","repositories_count":4,"last_synced_at":"2023-07-15T21:20:58.158Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/suchanek","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-15T21:20:58.209Z","updated_at":"2023-07-15T21:20:58.209Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/suchanek","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/suchanek/repositories"},"packages":[{"id":5959473,"name":"proteuspy","ecosystem":"pypi","description":"proteusPy - Protein Structure Analysis and Modeling Tools","homepage":null,"licenses":"BSD","normalized_licenses":["BSD-3-Clause"],"repository_url":"https://github.com/suchanek/proteusPy","keywords_array":["proteusPy","suchanek","disulfide"],"namespace":null,"versions_count":82,"first_release_published_at":"2023-01-25T21:36:09.000Z","latest_release_published_at":"2025-04-26T23:38:25.000Z","latest_release_number":"0.99.35","last_synced_at":"2025-12-23T07:32:04.987Z","created_at":"2023-01-25T21:43:51.455Z","updated_at":"2025-12-23T07:32:04.987Z","registry_url":"https://pypi.org/project/proteuspy/","install_command":"pip install proteuspy --index-url https://pypi.org/simple","documentation_url":"https://suchanek.github.io/proteusPy/","metadata":{"funding":null,"documentation":"https://suchanek.github.io/proteusPy/","classifiers":["Development Status :: 4 - Beta","Intended Audience :: Developers","Intended Audience :: Science/Research","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python :: 3.12","Topic :: Scientific/Engineering","Topic :: Scientific/Engineering :: Bio-Informatics","Topic :: Scientific/Engineering :: Chemistry"],"normalized_name":"proteuspy","project_status":null},"repo_metadata":{"id":64700352,"uuid":"575657091","full_name":"suchanek/proteusPy","owner":"suchanek","description":"A package for the modeling and analysis of proteins of known structure","archived":false,"fork":false,"pushed_at":"2025-05-16T23:41:54.000Z","size":663319,"stargazers_count":2,"open_issues_count":3,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-11-12T11:10:15.998Z","etag":null,"topics":["biophysics","structural"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/suchanek.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-12-08T02:17:29.000Z","updated_at":"2025-06-03T15:21:01.000Z","dependencies_parsed_at":"2025-06-05T02:41:05.916Z","dependency_job_id":null,"html_url":"https://github.com/suchanek/proteusPy","commit_stats":{"total_commits":392,"total_committers":2,"mean_commits":196.0,"dds":"0.0025510204081632404","last_synced_commit":"bdfc795b80ec401627fe286b2cb6a51c903f6e4d"},"previous_names":[],"tags_count":92,"template":false,"template_full_name":null,"purl":"pkg:github/suchanek/proteusPy","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/suchanek","download_url":"https://codeload.github.com/suchanek/proteusPy/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":27555328,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-12-06T02:00:06.463Z","response_time":60,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"suchanek","name":"Eric G. Suchanek, Ph.D.","uuid":"4127770","kind":"user","description":"Biophysicist by training, computer scientist by necessity, astronomer by compulsion and artist by will. Lover of life, living the dream with Paula and Kirra.","email":"","website":null,"location":"Cincinnati","twitter":null,"company":"Flux-Frontiers","icon_url":"https://avatars.githubusercontent.com/u/4127770?u=277bf83a78073d92bb8139d707404eac2923d965\u0026v=4","repositories_count":4,"last_synced_at":"2023-07-15T21:20:58.158Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/suchanek","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-15T21:20:58.209Z","updated_at":"2023-07-15T21:20:58.209Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/suchanek","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/suchanek/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-12-06T23:23:50.308Z","dependent_packages_count":0,"downloads":143,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":20.827810173062648,"dependent_repos_count":30.61104109666564,"dependent_packages_count":6.633233862033089,"stargazers_count":32.321425073297505,"forks_count":30.49154493947922,"average":24.17701102890762},"purl":"pkg:pypi/proteuspy","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/proteuspy","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/proteuspy","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/proteuspy/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-31T10:35:31.582Z","issues_count":8,"pull_requests_count":21,"avg_time_to_close_issue":2927466.0,"avg_time_to_close_pull_request":3905.4285714285716,"issues_closed_count":5,"pull_requests_closed_count":21,"pull_request_authors_count":2,"issue_authors_count":3,"avg_comments_per_issue":3.0,"avg_comments_per_pull_request":0.09523809523809523,"merged_pull_requests_count":20,"bot_issues_count":0,"bot_pull_requests_count":2,"past_year_issues_count":2,"past_year_pull_requests_count":19,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":129.3684210526316,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":19,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.05263157894736842,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":19,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/issues","maintainers":[{"login":"suchanek","count":24,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/suchanek"}],"active_maintainers":[{"login":"suchanek","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/suchanek"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/proteuspy/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/proteuspy/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/proteuspy/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/proteuspy/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/proteuspy/codemeta","maintainers":[{"uuid":"suchanek","login":"suchanek","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/suchanek/","role":null,"created_at":"2023-02-12T06:07:09.808Z","updated_at":"2023-02-12T06:07:09.808Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/suchanek/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":772153,"maintainers_count":328427,"namespaces_count":0,"keywords_count":252798,"github":"pypi","metadata":{"funded_packages_count":52163},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-12-30T07:12:42.001Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":699373,"full_name":"suchanek/proteusPy","default_branch":"master","total_commits":1367,"total_committers":2,"total_bot_commits":1,"total_bot_committers":1,"mean_commits":683.5,"dds":0.000731528895391409,"past_year_total_commits":305,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":305.0,"past_year_dds":0.0,"last_synced_at":"2025-12-18T11:29:17.959Z","last_synced_commit":"3970b3f9c7de0dea9c3173f64af687ad52b5681c","created_at":"2023-03-09T11:53:37.126Z","updated_at":"2025-12-18T11:29:17.794Z","committers":[{"name":"Eric Suchanek","email":"suchanek@mac.com","login":"suchanek","count":1366},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":1}],"past_year_committers":[{"name":"Eric G. Suchanek, PhD","email":"suchanek@mac.com","login":"suchanek","count":305}],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-12-31T00:00:56.974Z","repositories_count":6146502,"commits_count":931077420,"contributors_count":36236605,"owners_count":1130967,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"suchanek/proteusPy","html_url":"https://github.com/suchanek/proteusPy","last_synced_at":"2025-08-31T10:35:31.582Z","status":null,"issues_count":8,"pull_requests_count":21,"avg_time_to_close_issue":2927466.0,"avg_time_to_close_pull_request":3905.4285714285716,"issues_closed_count":5,"pull_requests_closed_count":21,"pull_request_authors_count":2,"issue_authors_count":3,"avg_comments_per_issue":3.0,"avg_comments_per_pull_request":0.09523809523809523,"merged_pull_requests_count":20,"bot_issues_count":0,"bot_pull_requests_count":2,"past_year_issues_count":2,"past_year_pull_requests_count":19,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":129.3684210526316,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":19,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.05263157894736842,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":19,"created_at":"2023-05-15T06:11:30.154Z","updated_at":"2025-09-02T19:10:36.958Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/suchanek%2FproteusPy/issues","issue_labels_count":{"table":{}},"pull_request_labels_count":{"table":{"dependencies":2}},"issue_author_associations_count":{"table":{"NONE":8,"OWNER":4}},"pull_request_author_associations_count":{"table":{"OWNER":20,"CONTRIBUTOR":2}},"issue_authors":{"table":{"AnjaConev":5,"suchanek":4,"hmacdope":2,"GanQiao1990":1}},"pull_request_authors":{"table":{"suchanek":20,"dependabot[bot]":2}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-12-23T00:00:36.934Z","repositories_count":12384432,"issues_count":35775399,"pull_requests_count":117466716,"authors_count":11069449,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{}},"past_year_pull_request_labels_count":{"table":{}},"past_year_issue_author_associations_count":{"table":{}},"past_year_pull_request_author_associations_count":{"table":{"OWNER":13}},"past_year_issue_authors":{"table":{}},"past_year_pull_request_authors":{"table":{"suchanek":13}},"maintainers":[{"table":{"login":"suchanek","count":24,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/suchanek"}}],"active_maintainers":[{"table":{"login":"suchanek","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/suchanek"}}]}},"events":{"total":{"CreateEvent":68,"ReleaseEvent":15,"IssuesEvent":3,"WatchEvent":1,"DeleteEvent":50,"IssueCommentEvent":1,"PushEvent":408,"PullRequestEvent":21,"GollumEvent":1},"last_year":{"ReleaseEvent":10,"WatchEvent":1,"DeleteEvent":31,"IssueCommentEvent":1,"PushEvent":276,"PullRequestEvent":13,"CreateEvent":50}},"keywords":["biophysics","structural"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/pytest.yml","sha":null,"kind":"manifest","created_at":"2024-11-07T15:34:04.318Z","updated_at":"2024-11-07T15:34:04.318Z","repository_link":"https://github.com/suchanek/proteusPy/blob/master/.github/workflows/pytest.yml","dependencies":[{"id":20612120840,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20612120841,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"viewer/docker-compose.yml","sha":null,"kind":"manifest","created_at":"2024-11-07T15:34:06.377Z","updated_at":"2024-11-07T15:34:06.377Z","repository_link":"https://github.com/suchanek/proteusPy/blob/master/viewer/docker-compose.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"old/setup.py","sha":null,"kind":"manifest","created_at":"2024-11-07T15:34:06.436Z","updated_at":"2024-11-07T15:34:06.436Z","repository_link":"https://github.com/suchanek/proteusPy/blob/master/old/setup.py","dependencies":[{"id":20612121658,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20612121659,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20612121660,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20612121661,"package_name":"pyvista","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"old/pyproject.toml","sha":null,"kind":"manifest","created_at":"2025-04-14T13:08:19.756Z","updated_at":"2025-04-14T13:08:19.756Z","repository_link":"https://github.com/suchanek/proteusPy/blob/master/old/pyproject.toml","dependencies":[{"id":22682560752,"package_name":"Bio","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682560755,"package_name":"colorama","ecosystem":"pypi","requirements":"==0.4.6","direct":true,"kind":"runtime","optional":false},{"id":22682560756,"package_name":"darkdetect","ecosystem":"pypi","requirements":"==0.8.0","direct":true,"kind":"runtime","optional":false},{"id":22682560757,"package_name":"gdown","ecosystem":"pypi","requirements":"==5.2.0","direct":true,"kind":"runtime","optional":false},{"id":22682560758,"package_name":"jupyter","ecosystem":"pypi","requirements":"==1.1.1","direct":true,"kind":"runtime","optional":false},{"id":22682560759,"package_name":"notebook","ecosystem":"pypi","requirements":"==7.2.2","direct":true,"kind":"runtime","optional":false},{"id":22682560760,"package_name":"nbconvert","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682560761,"package_name":"ipykernel","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682560762,"package_name":"ipywidgets","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682560763,"package_name":"jupyter_bokeh","ecosystem":"pypi","requirements":"==4.0.5","direct":true,"kind":"runtime","optional":false},{"id":22682561265,"package_name":"jupyter_contrib_nbextensions","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682561273,"package_name":"kaleido","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682561276,"package_name":"matplotlib","ecosystem":"pypi","requirements":"==3.9.2","direct":true,"kind":"runtime","optional":false},{"id":22682561281,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682561283,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682561286,"package_name":"panel","ecosystem":"pypi","requirements":"==1.5.3","direct":true,"kind":"runtime","optional":false},{"id":22682561290,"package_name":"param","ecosystem":"pypi","requirements":"==2.1.1","direct":true,"kind":"runtime","optional":false},{"id":22682561292,"package_name":"Pillow","ecosystem":"pypi","requirements":"==11.0.0","direct":true,"kind":"runtime","optional":false},{"id":22682561294,"package_name":"plotly","ecosystem":"pypi","requirements":"==5.24.1","direct":true,"kind":"runtime","optional":false},{"id":22682561296,"package_name":"plotly_express","ecosystem":"pypi","requirements":"==0.4.1","direct":true,"kind":"runtime","optional":false},{"id":22682561354,"package_name":"psutil","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682561355,"package_name":"pymolPy3","ecosystem":"pypi","requirements":"==0.1.2","direct":true,"kind":"runtime","optional":false},{"id":22682562140,"package_name":"Pympler","ecosystem":"pypi","requirements":"==1.1","direct":true,"kind":"runtime","optional":false},{"id":22682562141,"package_name":"pyvista","ecosystem":"pypi","requirements":"[all]","direct":true,"kind":"runtime","optional":false},{"id":22682562142,"package_name":"Requests","ecosystem":"pypi","requirements":"==2.32.3","direct":true,"kind":"runtime","optional":false},{"id":22682562143,"package_name":"scipy","ecosystem":"pypi","requirements":"==1.14.1","direct":true,"kind":"runtime","optional":false},{"id":22682562144,"package_name":"seaborn","ecosystem":"pypi","requirements":"==0.13.2","direct":true,"kind":"runtime","optional":false},{"id":22682562145,"package_name":"setuptools","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562146,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.67.0","direct":true,"kind":"runtime","optional":false},{"id":22682562147,"package_name":"trame-jupyter-extension","ecosystem":"pypi","requirements":"==2.1.3","direct":true,"kind":"runtime","optional":false},{"id":22682562431,"package_name":"vtk","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562496,"package_name":"wheel","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562497,"package_name":"tabulate","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2025-04-14T13:08:25.907Z","updated_at":"2025-04-14T13:08:25.907Z","repository_link":"https://github.com/suchanek/proteusPy/blob/master/pyproject.toml","dependencies":[{"id":22682562536,"package_name":"Biopython","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562794,"package_name":"colorama","ecosystem":"pypi","requirements":"==0.4.6","direct":true,"kind":"runtime","optional":false},{"id":22682562795,"package_name":"darkdetect","ecosystem":"pypi","requirements":"==0.8.0","direct":true,"kind":"runtime","optional":false},{"id":22682562796,"package_name":"gdown","ecosystem":"pypi","requirements":"==5.2.0","direct":true,"kind":"runtime","optional":false},{"id":22682562797,"package_name":"imageio","ecosystem":"pypi","requirements":"[ffmpeg]","direct":true,"kind":"runtime","optional":false},{"id":22682562798,"package_name":"jupyter","ecosystem":"pypi","requirements":"==1.1.1","direct":true,"kind":"runtime","optional":false},{"id":22682562799,"package_name":"notebook","ecosystem":"pypi","requirements":"==7.2.2","direct":true,"kind":"runtime","optional":false},{"id":22682562800,"package_name":"nbconvert","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562801,"package_name":"ipykernel","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562802,"package_name":"ipywidgets","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562803,"package_name":"jupyter_bokeh","ecosystem":"pypi","requirements":"==4.0.5","direct":true,"kind":"runtime","optional":false},{"id":22682562804,"package_name":"jupyter_contrib_nbextensions","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562805,"package_name":"kaleido","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562806,"package_name":"matplotlib","ecosystem":"pypi","requirements":"==3.9.2","direct":true,"kind":"runtime","optional":false},{"id":22682562807,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562808,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562809,"package_name":"panel","ecosystem":"pypi","requirements":"==1.5.3","direct":true,"kind":"runtime","optional":false},{"id":22682562810,"package_name":"param","ecosystem":"pypi","requirements":"==2.1.1","direct":true,"kind":"runtime","optional":false},{"id":22682562811,"package_name":"Pillow","ecosystem":"pypi","requirements":"==11.0.0","direct":true,"kind":"runtime","optional":false},{"id":22682562812,"package_name":"plotly","ecosystem":"pypi","requirements":"==5.24.1","direct":true,"kind":"runtime","optional":false},{"id":22682562813,"package_name":"plotly_express","ecosystem":"pypi","requirements":"==0.4.1","direct":true,"kind":"runtime","optional":false},{"id":22682562814,"package_name":"psutil","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562815,"package_name":"pymolPy3","ecosystem":"pypi","requirements":"==0.1.2","direct":true,"kind":"runtime","optional":false},{"id":22682562816,"package_name":"Pympler","ecosystem":"pypi","requirements":"==1.1","direct":true,"kind":"runtime","optional":false},{"id":22682562817,"package_name":"pyvista","ecosystem":"pypi","requirements":"[all]","direct":true,"kind":"runtime","optional":false},{"id":22682562818,"package_name":"Requests","ecosystem":"pypi","requirements":"==2.32.3","direct":true,"kind":"runtime","optional":false},{"id":22682562819,"package_name":"scipy","ecosystem":"pypi","requirements":"==1.14.1","direct":true,"kind":"runtime","optional":false},{"id":22682562820,"package_name":"seaborn","ecosystem":"pypi","requirements":"==0.13.2","direct":true,"kind":"runtime","optional":false},{"id":22682562821,"package_name":"setuptools","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562822,"package_name":"tabulate","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562823,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.67.0","direct":true,"kind":"runtime","optional":false},{"id":22682562824,"package_name":"trame-jupyter-extension","ecosystem":"pypi","requirements":"==2.1.3","direct":true,"kind":"runtime","optional":false},{"id":22682562825,"package_name":"vtk","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562826,"package_name":"wheel","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22682562827,"package_name":"networkx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"viewer/environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-05T02:41:03.226Z","updated_at":"2025-06-05T02:41:03.226Z","repository_link":"https://github.com/suchanek/proteusPy/blob/master/viewer/environment.yml","dependencies":[]}],"score":7.272398392570047,"created_at":"2025-04-11T10:17:26.307Z","updated_at":"2026-06-20T23:02:22.695Z","avatar_url":"https://github.com/suchanek.png","language":"Python","codemeta":null,"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/356573","html_url":"https://summary.ecosyste.ms/projects/356573"}