{"id":356272,"url":"https://github.com/samuelmurail/af_analysis","last_synced_at":"2026-06-19T18:30:26.281Z","repository":{"id":161119814,"uuid":"635748770","full_name":"samuelmurail/af_analysis","owner":"samuelmurail","description":" Analysis of alphafold and colabfold results","archived":false,"fork":false,"pushed_at":"2026-05-11T09:02:41.000Z","size":63216,"stargazers_count":45,"open_issues_count":4,"forks_count":9,"subscribers_count":2,"default_branch":"main","last_synced_at":"2026-05-17T02:02:57.817Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/samuelmurail.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-05-03T11:28:49.000Z","updated_at":"2026-05-11T09:02:55.000Z","dependencies_parsed_at":null,"dependency_job_id":"b8f713a6-b53d-4542-9607-c6db603f0113","html_url":"https://github.com/samuelmurail/af_analysis","commit_stats":null,"previous_names":["samuelmurail/af_analysis","samuelmurail/af2_analysis"],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/samuelmurail/af_analysis","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/samuelmurail","download_url":"https://codeload.github.com/samuelmurail/af_analysis/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":33153670,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-17T09:28:26.183Z","status":"ssl_error","status_checked_at":"2026-05-17T09:27:52.702Z","response_time":107,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"samuelmurail","name":"Samuel Murail","uuid":"31649605","kind":"user","description":"Assistant Professor of bioinformatics","email":"","website":"https://samuelmurail.github.io/PersonalPage/","location":"Paris","twitter":null,"company":"Université de Paris","icon_url":"https://avatars.githubusercontent.com/u/31649605?u=6d00a32adebd68dfeab6e8f1d178f98a481a7c0c\u0026v=4","repositories_count":6,"last_synced_at":"2023-03-11T06:47:33.244Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/samuelmurail","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-15T01:00:24.309Z","updated_at":"2023-03-11T06:47:33.263Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/samuelmurail","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/samuelmurail/repositories"},"packages":[{"id":11027275,"name":"af-analysis","ecosystem":"pypi","description":"`AF analysis` is a python library allowing analysis of Alphafold results.","homepage":"https://github.com/samuelmurail/af_analysis","licenses":"GPL-2.0","normalized_licenses":["GPL-2.0"],"repository_url":"https://github.com/samuelmurail/af_analysis","keywords_array":["AlphaFold2","ColabFold","Python","af_analysis"],"namespace":null,"versions_count":5,"first_release_published_at":"2024-11-08T14:33:07.000Z","latest_release_published_at":"2026-04-08T09:19:28.000Z","latest_release_number":"0.2.1","last_synced_at":"2026-05-06T21:04:18.728Z","created_at":"2024-11-08T14:39:06.771Z","updated_at":"2026-05-06T21:07:20.717Z","registry_url":"https://pypi.org/project/af-analysis/","install_command":"pip install af-analysis --index-url https://pypi.org/simple","documentation_url":"https://af-analysis.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 4 - Beta","Environment :: Console","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Natural Language :: English","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.9","Programming Language :: Python :: Implementation :: CPython","Programming Language :: Python :: Implementation :: PyPy","Topic :: Software Development"],"normalized_name":"af-analysis","project_status":null},"repo_metadata":{"id":161119814,"uuid":"635748770","full_name":"samuelmurail/af_analysis","owner":"samuelmurail","description":" Analysis of alphafold and colabfold results","archived":false,"fork":false,"pushed_at":"2026-04-09T07:19:48.000Z","size":63216,"stargazers_count":44,"open_issues_count":4,"forks_count":9,"subscribers_count":2,"default_branch":"main","last_synced_at":"2026-05-04T20:09:59.161Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/samuelmurail.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-05-03T11:28:49.000Z","updated_at":"2026-05-04T05:01:21.000Z","dependencies_parsed_at":null,"dependency_job_id":"b8f713a6-b53d-4542-9607-c6db603f0113","html_url":"https://github.com/samuelmurail/af_analysis","commit_stats":null,"previous_names":["samuelmurail/af_analysis","samuelmurail/af2_analysis"],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/samuelmurail/af_analysis","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/samuelmurail","download_url":"https://codeload.github.com/samuelmurail/af_analysis/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32712028,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-06T19:35:05.142Z","status":"ssl_error","status_checked_at":"2026-05-06T19:35:03.996Z","response_time":117,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"samuelmurail","name":"Samuel Murail","uuid":"31649605","kind":"user","description":"Assistant Professor of bioinformatics","email":"","website":"https://samuelmurail.github.io/PersonalPage/","location":"Paris","twitter":null,"company":"Université de Paris","icon_url":"https://avatars.githubusercontent.com/u/31649605?u=6d00a32adebd68dfeab6e8f1d178f98a481a7c0c\u0026v=4","repositories_count":6,"last_synced_at":"2023-03-11T06:47:33.244Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/samuelmurail","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-15T01:00:24.309Z","updated_at":"2023-03-11T06:47:33.263Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/samuelmurail","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/samuelmurail/repositories"},"tags":[{"name":"v0.2.0","sha":"15a3516fd06d10a7ad1095c58e77a545986f0669","kind":"commit","published_at":"2026-04-08T08:47:59.000Z","download_url":"https://codeload.github.com/samuelmurail/af_analysis/tar.gz/v0.2.0","html_url":"https://github.com/samuelmurail/af_analysis/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/samuelmurail/af_analysis@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/tags/v0.2.0/manifests"},{"name":"v0.1.4","sha":"c8cde0c416f107cd9900322d4a94b67bfae10c34","kind":"commit","published_at":"2025-02-12T13:37:04.000Z","download_url":"https://codeload.github.com/samuelmurail/af_analysis/tar.gz/v0.1.4","html_url":"https://github.com/samuelmurail/af_analysis/releases/tag/v0.1.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/samuelmurail/af_analysis@v0.1.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/tags/v0.1.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/tags/v0.1.4/manifests"}]},"repo_metadata_updated_at":"2026-05-06T21:07:20.717Z","dependent_packages_count":0,"downloads":291,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":56.64405620131274,"dependent_packages_count":10.06434624345727,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":33.35420122238501},"purl":"pkg:pypi/af-analysis","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/af-analysis","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/af-analysis","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/af-analysis/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2026-04-22T14:02:19.351Z","issues_count":10,"pull_requests_count":8,"avg_time_to_close_issue":8972437.8,"avg_time_to_close_pull_request":123489.71428571429,"issues_closed_count":5,"pull_requests_closed_count":7,"pull_request_authors_count":5,"issue_authors_count":9,"avg_comments_per_issue":2.2,"avg_comments_per_pull_request":0.25,"merged_pull_requests_count":7,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":7,"past_year_pull_requests_count":6,"past_year_avg_time_to_close_issue":6517695.5,"past_year_avg_time_to_close_pull_request":134152.4,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":5,"past_year_pull_request_authors_count":4,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":2.142857142857143,"past_year_avg_comments_per_pull_request":0.3333333333333333,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":5,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/issues","maintainers":[{"login":"nchenche","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nchenche"},{"login":"samuelmurail","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/samuelmurail"}],"active_maintainers":[{"login":"nchenche","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nchenche"},{"login":"samuelmurail","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/samuelmurail"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/af-analysis/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/af-analysis/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/af-analysis/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/af-analysis/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/af-analysis/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/af-analysis/codemeta","maintainers":[{"uuid":"samuel.murail","login":"samuel.murail","name":null,"email":null,"url":null,"packages_count":9,"html_url":"https://pypi.org/user/samuel.murail/","role":null,"created_at":"2024-11-08T14:45:48.953Z","updated_at":"2024-11-08T14:45:48.953Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/samuel.murail/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":864824,"maintainers_count":369582,"namespaces_count":0,"keywords_count":280639,"github":"pypi","metadata":{"funded_packages_count":53810},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2026-05-13T05:09:37.527Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":9624569,"full_name":"samuelmurail/af_analysis","default_branch":"main","total_commits":281,"total_committers":5,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":56.2,"dds":0.039145907473309594,"past_year_total_commits":98,"past_year_total_committers":4,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":24.5,"past_year_dds":0.09183673469387754,"last_synced_at":"2026-05-12T10:51:34.563Z","last_synced_commit":"9a3b5e30ce2524120687db8c98c477928c78d80b","created_at":"2025-04-11T10:19:34.816Z","updated_at":"2026-05-12T10:51:33.023Z","committers":[{"name":"samuelmurail","email":"samuel.murail@univ-paris-diderot.fr","login":"samuelmurail","count":270},{"name":"NessimRaou","email":"nessim.raouraoua.etu@univ-lille.fr","login":"NessimRaou","count":5},{"name":"Alaa REGUEI","email":"166214182+regueiala","login":"regueiala","count":2},{"name":"nchenche","email":"nicolas.chevrollier@laposte.net","login":"nchenche","count":2},{"name":"Alexis","email":"alexisdougha@hotmail.fr","login":"alexisdougha","count":2}],"past_year_committers":[{"name":"samuelmurail","email":"samuel.murail@univ-paris-diderot.fr","login":"samuelmurail","count":89},{"name":"NessimRaou","email":"nessim.raouraoua.etu@univ-lille.fr","login":"NessimRaou","count":5},{"name":"nchenche","email":"nicolas.chevrollier@laposte.net","login":"nchenche","count":2},{"name":"Alexis","email":"alexisdougha@hotmail.fr","login":"alexisdougha","count":2}],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-05-16T00:00:17.015Z","repositories_count":6235136,"commits_count":884518974,"contributors_count":34907109,"owners_count":1153856,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues":{"table":{"full_name":"samuelmurail/af_analysis","html_url":"https://github.com/samuelmurail/af_analysis","last_synced_at":"2026-04-22T14:02:19.351Z","status":"active","issues_count":10,"pull_requests_count":8,"avg_time_to_close_issue":8972437.8,"avg_time_to_close_pull_request":123489.71428571429,"issues_closed_count":5,"pull_requests_closed_count":7,"pull_request_authors_count":5,"issue_authors_count":9,"avg_comments_per_issue":2.2,"avg_comments_per_pull_request":0.25,"merged_pull_requests_count":7,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":7,"past_year_pull_requests_count":6,"past_year_avg_time_to_close_issue":6517695.5,"past_year_avg_time_to_close_pull_request":134152.4,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":5,"past_year_pull_request_authors_count":4,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":2.142857142857143,"past_year_avg_comments_per_pull_request":0.3333333333333333,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":5,"created_at":"2025-04-11T10:19:45.229Z","updated_at":"2026-04-22T14:02:19.351Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuelmurail%2Faf_analysis/issues","issue_labels_count":{"table":{}},"pull_request_labels_count":{"table":{}},"issue_author_associations_count":{"table":{"NONE":10}},"pull_request_author_associations_count":{"table":{"CONTRIBUTOR":5,"OWNER":1,"NONE":1,"COLLABORATOR":1}},"issue_authors":{"table":{"Halewijn11":2,"gabrieliacc":1,"srmnitc":1,"GitHuBinet":1,"tubiana":1,"KuangHu":1,"BuseSahin1":1,"yx0516":1,"gdlampe":1}},"pull_request_authors":{"table":{"alexisdougha":3,"regueiala":2,"nchenche":1,"NessimRaou":1,"samuelmurail":1}},"host":{"table":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-05-17T00:00:41.354Z","repositories_count":14622035,"issues_count":34213702,"pull_requests_count":111958791,"authors_count":11264435,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"}},"past_year_issue_labels_count":{"table":{}},"past_year_pull_request_labels_count":{"table":{}},"past_year_issue_author_associations_count":{"table":{"NONE":6}},"past_year_pull_request_author_associations_count":{"table":{"CONTRIBUTOR":3,"COLLABORATOR":1,"NONE":1,"OWNER":1}},"past_year_issue_authors":{"table":{"Halewijn11":2,"gabrieliacc":1,"gdlampe":1,"GitHuBinet":1,"yx0516":1}},"past_year_pull_request_authors":{"table":{"alexisdougha":3,"nchenche":1,"NessimRaou":1,"samuelmurail":1}},"maintainers":[{"table":{"login":"nchenche","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nchenche"}},{"table":{"login":"samuelmurail","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/samuelmurail"}}],"active_maintainers":[{"table":{"login":"nchenche","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nchenche"}},{"table":{"login":"samuelmurail","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/samuelmurail"}}]}},"events":{"total":{"ReleaseEvent":2,"DeleteEvent":2,"PullRequestEvent":2,"ForkEvent":4,"IssuesEvent":8,"WatchEvent":19,"IssueCommentEvent":13,"PushEvent":79,"CreateEvent":4},"last_year":{"DeleteEvent":2,"PullRequestEvent":2,"ForkEvent":2,"IssuesEvent":3,"WatchEvent":5,"IssueCommentEvent":4,"PushEvent":33,"CreateEvent":1}},"keywords":[],"dependencies":[],"score":11.178012012813008,"created_at":"2025-04-11T10:15:59.483Z","updated_at":"2026-06-19T18:30:26.282Z","avatar_url":"https://github.com/samuelmurail.png","language":"Jupyter Notebook","codemeta":null,"publiccode":null,"project_url":"https://summary.ecosyste.ms/api/v1/projects/356272","html_url":"https://summary.ecosyste.ms/projects/356272"}