https://github.com/zmjones/edarf/
exploratory data analysis using random forests
exploratory-data-analysis machine-learning r random-forest rstats
Last synced: 28 Sep 2026
https://github.com/bihealth/vcfpy
Python 3 library with good support for both reading and writing VCF
bioinformatics file-format parsing vcf writing
Last synced: 28 Sep 2026
https://github.com/chtheodoro/Habfuzz
HABFUZZ [Software] · A command-line tool for data-driven fuzzy modelling
bayesian-algorithm fuzzy-logic habitat-model habitat-suitability macroinvertebrates
Last synced: 28 Sep 2026
https://github.com/DannyArends/CTLmapping
Correlated Trait Locus (CTL) mapping
correlation genetic gwas inference level multi network omics
Last synced: 28 Sep 2026
https://github.com/pboesu/rucrdtw
R Bindings for the UCR Suite for fast time series subsequence search
Last synced: 28 Sep 2026
https://github.com/ropensci/plater
Tools to make it easy to work with microtiter plate-shaped data
r r-package rstats
Last synced: 28 Sep 2026
https://github.com/Dih5/xpecgen
A python package with a GUI to calculate X-ray sPECtra GENerated in tungsten anodes.
Last synced: 28 Sep 2026
https://github.com/BirolLab/RAILS
🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling
Last synced: 28 Sep 2026
https://github.com/DoSOCSv2/DoSOCSv2
SPDX 2.0 document creation and storage
Last synced: 28 Sep 2026
https://github.com/eclipse-archived/golo-lang
Golo - a lightweight dynamic language for the JVM.
golo invokedynamic java jvm language programming-language
Last synced: 28 Sep 2026
https://github.com/kdesimone/popeye
A population receptive field estimation tool
Last synced: 28 Sep 2026
https://github.com/ViDA-NYU/reprozip
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
archiving computational-science docker hacktoberfest linux nyu ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant
Last synced: 28 Sep 2026
https://github.com/sanger-pathogens/mlst_check
Multilocus sequence typing by blast using the schemes from PubMLST
bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases next-generation-sequencing pathogen research sequencing
Last synced: 28 Sep 2026
https://github.com/bmcfee/resampy
Efficient sample rate conversion in python
audio dsp nyucds python
Last synced: 28 Sep 2026
https://github.com/sewardlee337/finreportr
R package - Financial Data from U.S. Securities and Exchange Commission
balance-sheet cash-flow finance financial-data financial-statement financial-statements income-statement r sec stock-ticker-symbol
Last synced: 28 Sep 2026
https://github.com/rvhonorato/cazy-parser
A way to extract specific information from CAZy
carbohydrates cazy data-mining enzymes scrapper text-mining
Last synced: 28 Sep 2026
https://github.com/ElektraInitiative/libelektra
Elektra serves as a universal and secure framework to access configuration settings in a global, hierarchical key database.
administrator c c-plus-plus configuration configuration-files configuration-management configuration-parser elektra key-database
Last synced: 28 Sep 2026
https://github.com/genomematt/survivalvolume
A set of tools for parsing measurement with threshold over time data (eg tyre wear, tumour treatment studies) and generating interactive and static plots.
Last synced: 28 Sep 2026
https://github.com/cvitolo/fuse
fuse: an R package implementing the Framework for Understanding Structural Errors
Last synced: 28 Sep 2026
https://github.com/openeventdata/petrarch2
Another next-generation event coding platform.
Last synced: 28 Sep 2026
https://github.com/opencobra/optlang
optlang - sympy based mathematical programming language
Last synced: 28 Sep 2026
https://github.com/baccuslab/pyret
Python tools for analysis of neurophysiology data
electrophysiology neuroscience python scientific-computing tools
Last synced: 28 Sep 2026
https://github.com/SALib/SALib
Sensitivity Analysis Library in Python. Contains Sobol, Morris, FAST, and other methods.
global-sensitivity-analysis joss morris numpy python salib sensitivity-analysis sensitivity-analysis-library sobol uncertainty uncertainty-quantification
Last synced: 28 Sep 2026
https://github.com/kakearney/ecopath_matlab-pkg
Matlab implementation of the Ecopath food web mass-balance algorithm
Last synced: 28 Sep 2026
https://github.com/openeventdata/mordecai
Full text geoparsing as a Python library
geocoding geonames geoparsing nlp spacy toponym-resolution
Last synced: 28 Sep 2026
https://github.com/ropensci-archive/hddtools
Hydrological Data Discovery Tools (R package for hydrology and open data)
data60uk grdc hydrology kgclimateclass mopex peer-reviewed precipitation r r-package rstats sepa
Last synced: 28 Sep 2026
https://github.com/abntex/limarka
Escreva seu trabalho de conclusão de curso com as normas da ABNT em Markdown
abnt abntex escrita latex limarka markdown texto
Last synced: 28 Sep 2026
https://github.com/ropensci/GSODR
Data Access Client for Global Surface Summary of the Day (GSOD) Weather Written in R
daily-data daily-weather data-access global-data gsod historical-data historical-weather ncdc ncei r r-package rstats weather weather-data weather-information weather-stations
Last synced: 28 Sep 2026
https://github.com/ArdiaD/RiskPortfolios
Functions for the construction of risk-based portfolios
covariance optimization portfolio portfolio-optimization risk
Last synced: 28 Sep 2026
https://github.com/koalaverse/KraljicMatrix
An R package for implementing the Kraljic Matrix to strategically analyze a firm’s purchasing portfolio
cran decision-support kraljic-matrix managerial-preferences r
Last synced: 28 Sep 2026
https://github.com/keblu/nse
Offers mutliple ways to calculate numerical standard errors (NSE) of univariate (or multivariate in some cases) time series.
econometrics hac nse package r
Last synced: 28 Sep 2026
https://github.com/KitwareMedical/SlicerITKUltrasound
Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.
3d-slicer 3d-slicer-extension arfi insight-toolkit itk ultrasound
Last synced: 28 Sep 2026
https://github.com/mlr-org/batchtools
Tools for computation on batch systems
batchexperiments batchjobs cran docker-swarm high-performance-computing hpc hpc-clusters lsf openlava parallel-computing r reproducibility sge slurm torque
Last synced: 28 Sep 2026
https://github.com/RadioAstronomySoftwareGroup/pyuvdata
A pythonic interface for radio astronomy interferometry data (uvfits, measurement sets, uvh5, others)
astronomy interferometry python radio-astronomy
Last synced: 29 Sep 2026
https://github.com/arcaravaggi/remBoot
R package for Random Encounter Modelling
animal-densities density-estimation estimate modelling rems
Last synced: 28 Sep 2026
https://github.com/cdcrabtree/plotrr
Functions for making visual exploratory data analysis with nested data easier.
exploratory-data-analysis helpers r visualization
Last synced: 28 Sep 2026
https://github.com/sgrieve/spatial_efd
A spatial aware implementation of elliptical Fourier analysis
fourier-analysis geoscience geospatial gis python-library spatial-analysis spatial-functions
Last synced: 28 Sep 2026
https://github.com/ropensci-archive/lawn
:no_entry: ARCHIVED :no_entry: Client for 'Turfjs' for 'Geospatial' Analysis
geojson geospatial r r-package rstats turf turfjs
Last synced: 28 Sep 2026
https://github.com/migueldvb/cine
Calculate infrared pumping rates by solar radiation
astronomy comets python science
Last synced: 28 Sep 2026
https://github.com/hpchud/vccjs
A framework for building HPC and parallel containers
Last synced: 28 Sep 2026
https://github.com/andyyao95/walkr
This package implements MCMC random walks in the intersection of the n-simplex and hyperplanes
Last synced: 28 Sep 2026
https://github.com/scikit-learn-contrib/hdbscan
A high performance implementation of HDBSCAN clustering.
cluster-analysis clustering clustering-algorithm clustering-evaluation machine-learning machine-learning-algorithms
Last synced: 28 Sep 2026
https://github.com/JunoLab/Weave.jl
Scientific reports/literate programming for Julia
julia literate-programming reproducible-research scientific-reports scientific-workflows
Last synced: 28 Sep 2026
https://github.com/ropensci/getCRUCLdata
CRU CL v. 2.0 Climatology Client for R
climate-data cru cru-cl2 data-access diurnal-temperature elevation frost peer-reviewed r r-package rainfall relative-humidity rstats solar-radiation temperature wind
Last synced: 28 Sep 2026
https://github.com/msmexplorer/msmexplorer
Data visualizations for biomolecular dynamics
Last synced: 28 Sep 2026
https://github.com/elabftw/elabftw
:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.
docker laboratory lims mysql notebook php
Last synced: 29 Sep 2026
https://github.com/NickC1/skedm
Empirical dynamic modeling in scikit-learn's style
Last synced: 28 Sep 2026
https://github.com/gboeing/osmnx/
Download, model, analyze, and visualize street networks and other geospatial features from OpenStreetMap.
geography geospatial gis mapping networks networkx openstreetmap osm osmnx overpass-api python routing spatial spatial-analysis spatial-data street-networks transport transportation urban urban-planning
Last synced: 29 Sep 2026
https://github.com/openclimatedata/pyhector/
Python interface for the simple global climate carbon-cycle model Hector
climate-model hector-model python-wrapper
Last synced: 28 Sep 2026
https://github.com/AFIT-R/learningCurve
An Implementation of Crawford's and Wright's Learning Curve Production Functions
cran-r learning-curves r
Last synced: 28 Sep 2026
https://github.com/kactus2/kactus2dev
Kactus2 is a graphical EDA tool based on the IP-XACT standard.
design eda fpga hardware hdl ip-xact mpsoc reuse system-on-chip
Last synced: 28 Sep 2026
https://github.com/dgerosa/filltex
Automatic queries to ADS and INSPIRE databases to fill LaTex bibliography
Last synced: 28 Sep 2026
https://github.com/sanger-pathogens/saffrontree
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases next-generation-sequencing pathogen research sequencing
Last synced: 28 Sep 2026
https://github.com/cmutel/pandarus
GIS toolkit for regionalized life cycle assessment
Last synced: 28 Sep 2026
https://github.com/luk87/YoungTab
YoungTab is a mathematical tool to compute the dimension of irreducible representations of the classical Lie algebras A, B, C, D, described by Young tableaux.
Last synced: 28 Sep 2026
https://github.com/reichlab/flusight
Influenza forecasts visualizer
epidemiology forecasting influenza prediction statistics visualizer
Last synced: 28 Sep 2026
https://github.com/k3jph/bumblebees
Virtual Bumblebees
agent-based-modeling artificial-life simulation virtual-ants
Last synced: 28 Sep 2026
https://github.com/gauteh/ibcao_py
A matplotlib library for using the International Bathymetric Chart of the Arctic Ocean with cartopy and matplotlib
arctic-ocean gis ibcao matplotlib python
Last synced: 28 Sep 2026
https://github.com/eclipse-mosquitto/mosquitto
Eclipse Mosquitto - An open source MQTT broker
broker eclipse-iot iot messaging mosquitto mqtt mqtt-broker mqtt-client mqtt-server
Last synced: 29 Sep 2026
https://github.com/kdm9/libqcpp
libqc++: C++11 library for next-gen sequence quality control and assessment.
Last synced: 28 Sep 2026
https://github.com/bjmorgan/lattice_mc
Lattice gas Monte Carlo simulation code
kinetic-monte-carlo lattice-gas monte-carlo monte-carlo-simulation solid-state-physics
Last synced: 28 Sep 2026
https://github.com/andim/noisyopt
Python library for optimizing noisy functions.
optimization
Last synced: 28 Sep 2026
https://github.com/rorynolan/filesstrings
A set of operations for manipulating strings in R, built on top of the stringr package and inspired by my struggles in trying to sensibly rename microscopy images.
Last synced: 28 Sep 2026
https://github.com/BioPandas/biopandas
Working with molecular structures in pandas DataFrames
bioinformatics computational-biology drug-discovery mol2 molecular-structures molecule molecules pandas-dataframe pdb pdb-files protein-structure
Last synced: 28 Sep 2026
https://github.com/roguephysicist/SHGYield
A Python program for calculating the surface SHG yield for semiconductors.
nonlinear numpy optics physics python scipy second-harmonic semiconductor semiconductor-physics semiconductor-surfaces shg solid-state-physics spectroscopy surfaces
Last synced: 28 Sep 2026
https://github.com/jdidion/xphyle
Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compression format. (production)
Last synced: 28 Sep 2026
https://github.com/ben-aaron188/netanos
NETANOS: Named entity-based Text Anonymization for Open Science'
Last synced: 28 Sep 2026
https://github.com/ropensci/osmdata
R package for downloading OpenStreetMap data
cpp openstreetmap osm osm-data overpass-api peer-reviewed r r-package rstats
Last synced: 28 Sep 2026
https://github.com/dib-lab/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
bioinformatics bloom-filter count-min-sketch dna graph-traversal k-mer python
Last synced: 28 Sep 2026
https://github.com/domoritz/label_generator
Training data generator for text detection
deep-learning neural-network python text-detection
Last synced: 28 Sep 2026
https://github.com/barbagroup/cuIBM
cuIBM: a GPU-based immersed boundary method code.
Last synced: 28 Sep 2026
https://github.com/nhejazi/biotmle
:package: :microscope: R/biotmle: Targeted Learning with Moderated Statistics for Biomarker Discovery
bioconductor bioconductor-package bioconductor-packages bioinformatics biomarker-discovery biostatistics causal-inference computational-biology machine-learning r statistics targeted-learning
Last synced: 28 Sep 2026
https://github.com/OpenSpace/OpenSpace
This is the official GitHub repository for OpenSpace: an open source astrovisualization project. For instructions on how to build and run OpenSpace, see the Getting Started Guides on the wiki page at http://docs.openspaceproject.com.
astronomy data-visualization planetarium science space universe visualization
Last synced: 29 Sep 2026
https://github.com/dhermes/bezier
Helper for Bézier Curves, Triangles, and Higher Order Objects
Last synced: 28 Sep 2026
https://github.com/ropensci-archive/rtimicropem
:no_entry: ARCHIVED :no_entry: Supports the Analysis of RTI MicroPEM Output Files
peer-reviewed pm25 r r-package rstats rti-micropem
Last synced: 28 Sep 2026
https://github.com/IndEcol/country_converter
The country converter (coco) - a Python package for converting country names between different classification schemes.
Last synced: 28 Sep 2026
https://github.com/TACC/launcher
A simple utility for executing multiple sequential or multi-threaded applications in a single multi-node batch job
batch-processing heterogeneous hpc launcher parametric-submission shell tacc xsede
Last synced: 28 Sep 2026
https://github.com/scikit-hep/root_numpy
The interface between ROOT and NumPy
cern cython hep numpy python root
Last synced: 28 Sep 2026
https://github.com/ropensci/iheatmapr
Complex, interactive heatmaps in R
data-visualization heatmap interactive-visualizations peer-reviewed plotly r r-package rstats
Last synced: 28 Sep 2026
https://github.com/ropensci/RefManageR
R package RefManageR
peer-reviewed r r-package rstats
Last synced: 28 Sep 2026
https://github.com/vanheeringen-lab/genomepy
genes and genomes at your fingertips
bioconda ensembl genome ncbi python ucsc
Last synced: 28 Sep 2026
https://github.com/xuanxu/nimbus
Nimbus is a Ruby gem to implement Random Forest algorithms in a genomic selection context
random-forest
Last synced: 28 Sep 2026
https://github.com/ropensci/visdat
Preliminary Exploratory Visualisation of Data
exploratory-data-analysis missingness peer-reviewed r r-package ropensci rstats visualisation
Last synced: 28 Sep 2026
https://github.com/Chilipp/psyplot
Python package for interactive data visualization
Last synced: 28 Sep 2026
https://github.com/MonashBioinformaticsPlatform/varistran
R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
Last synced: 28 Sep 2026
https://github.com/SebastianoF/bruker2nifti
Medical image format converter: from raw Bruker ParaVision to nifti.
Last synced: 28 Sep 2026
https://github.com/pjamesjoyce/lcopt
Create foreground LCA models via an intuitive user interface and analyse them using Brightway2
brightway2 foreground-models gui lca python
Last synced: 28 Sep 2026
https://github.com/ornl-ndav/django-remote-submission
The django-remote-submission is an asynchronous task/job queue using Celery Distributed Task Queue and Redis in-memory data structure store as message broker.
Last synced: 28 Sep 2026
https://github.com/barbagroup/AmgXWrapper
AmgXWrapper: An interface between PETSc and the NVIDIA AmgX library
amgx gpu mpi nvidia petsc
Last synced: 28 Sep 2026